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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1072.9 nTPM
HPA Brain:1214.4 nTPM
GTEx:1072.9 nTPM
FANTOM5:1782.8 Scaled Tags Per Million
Pig:226.4 nTPM
Mouse:148.3 nTPM
Allen mouse:6.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1214.4
Sample id Sample description nTPM
Amygdala
nTPM: 1214.4
2814 Male, age 76, right hemisphere 1514.7
2695 Female, age 67, right hemisphere 1411.9
2514 Male, age 75, right hemisphere 1164.0
1987 Female, age 91, left hemisphere 1057.8
2517 Female, age 94, left hemisphere 923.5
Basal amygdala
nTPM: 868.0
2609 Male, age 75, right hemisphere 1226.2
1955 Male, age 76, both hemispheres 998.2
2110 Male, age 80, left hemisphere 864.3
2827 Female, age 67, right hemisphere 814.2
2685 Female, age 94, left hemisphere 793.7
2243 Female, age 91, right hemisphere 511.4
Central amygdala
nTPM: 907.9
2515 Male, age 75, right hemisphere 1184.7
1905 Male, age 76, both hemispheres 1070.1
2239 Male, age 80, left hemisphere 828.4
2701 Female, age 91, right hemisphere 761.4
2826 Female, age 94, left hemisphere 695.1
Corticomedial amygdala
nTPM: 739.0
2428 Male, age 75, right hemisphere 1060.8
2240 Male, age 76, both hemispheres 951.6
2429 Female, age 94, left hemisphere 733.9
2535 Female, age 67, right hemisphere 631.7
2242 Female, age 91, right hemisphere 570.5
2829 Male, age 80, left hemisphere 485.5
Lateral amygdala
nTPM: 964.9
2516 Male, age 75, right hemisphere 1163.8
1883 Male, age 76, both hemispheres 1102.2
2256 Male, age 80, left hemisphere 1079.5
2830 Female, age 67, right hemisphere 1004.2
2255 Female, age 91, right hemisphere 732.0
2534 Female, age 94, left hemisphere 707.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1072.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1072.9
Samples: 181

Max nTPM: 6729.1
Min nTPM: 296.5
Std nTPM: 792.8
Median nTPM: 899.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 6729.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5949.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3742.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 3229.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 2769.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2745.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2560.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2487.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2415.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2378.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2102.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 2081.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2079.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2048.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1873.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1831.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1808.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1738.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1713.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1680.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1670.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1641.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1640.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1593.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1573.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1556.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1544.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1538.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1524.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1504.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1489.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1467.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1465.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1443.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1427.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1389.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1385.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1377.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1343.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1315.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1299.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1295.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1290.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1264.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1259.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1256.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1240.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1237.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1209.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1201.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1187.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1177.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1174.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1166.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1156.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1152.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1149.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1133.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1113.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1110.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1096.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1091.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1088.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1080.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1078.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1066.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1065.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1063.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1061.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1055.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1038.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1034.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1028.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1026.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1025.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1022.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 998.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 984.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 976.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 970.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 969.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 948.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 923.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 919.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 918.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 911.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 905.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 903.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 902.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 901.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 899.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 899.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 895.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 881.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 877.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 872.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 872.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 868.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 861.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 854.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 842.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 838.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 825.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 821.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 819.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 804.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 799.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 784.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 780.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 777.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 773.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 763.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 754.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 747.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 744.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 738.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 731.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 721.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 718.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 717.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 715.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 710.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 705.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 704.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 704.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 703.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 683.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 665.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 641.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 640.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 628.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 618.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 616.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 612.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 606.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 596.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 591.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 590.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 578.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 577.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 567.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 559.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 558.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 554.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 551.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 551.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 550.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 549.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 547.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 547.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 544.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 542.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 534.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 522.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 519.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 513.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 511.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 508.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 501.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 463.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 460.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 451.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 450.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 450.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 448.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 448.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 442.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 429.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 424.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 408.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 405.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 397.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 391.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 375.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 359.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 355.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 354.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 337.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 327.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 318.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 296.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1782.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1782.8
FF:10151-102I7 76 years, female 1782.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.4
Pig sample Sample description nTPM
Amygdala
nTPM: 226.4
Samples: 4

Max nTPM: 307.5
Min nTPM: 161.8
Sample A Female 228.2
Sample B Female 307.5
Sample C Male 208.0
Sample D Male 161.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 148.3
Samples: 4

Max nTPM: 215.0
Min nTPM: 117.5
Sample A Male 117.5
Sample B Male 125.0
Sample C Female 215.0
Sample D Female 135.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.7
72182998 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 6.7
74357575 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 5.1

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