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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • HSPA8
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:493.1 nTPM
FANTOM5:1319.5 Scaled Tags Per Million
Pig:913.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA052504Antibody CAB002056
Glial cells Not detectedLow
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

493.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 493.1
Samples: 300

Max nTPM: 2275.1
Min nTPM: 226.4
Std nTPM: 236.3
Median nTPM: 435.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 2275.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2027.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1384.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1380.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1251.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1240.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1203.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1170.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1162.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1144.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1119.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1078.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1051.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 932.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 923.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 869.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 854.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 852.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 777.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 774.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 771.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 768.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 743.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 743.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 742.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 726.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 720.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 708.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 708.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 699.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 695.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 686.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 683.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 682.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 678.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 678.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 674.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 666.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 658.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 655.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 653.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 649.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 649.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 649.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 647.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 643.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 632.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 631.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 626.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 620.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 619.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 616.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 612.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 603.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 600.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 598.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 593.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 591.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 590.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 588.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 588.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 586.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 586.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 583.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 573.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 565.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 564.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 564.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 563.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 558.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 555.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 553.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 552.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 552.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 550.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 548.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 547.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 542.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 539.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 537.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 532.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 532.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 526.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 524.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 522.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 513.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 512.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 510.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 510.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 508.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 507.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 507.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 506.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 505.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 502.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 502.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 501.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 501.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 500.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 499.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 499.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 496.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 496.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 495.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 495.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 494.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 491.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 489.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 488.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 486.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 486.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 484.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 476.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 476.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 476.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 474.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 473.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 468.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 468.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 467.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 465.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 465.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 465.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 464.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 463.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 463.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 463.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 456.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 455.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 454.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 454.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 454.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 453.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 452.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 451.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 450.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 448.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 448.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 447.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 447.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 445.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 440.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 439.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 439.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 438.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 437.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 437.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 437.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 436.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 435.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 434.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 433.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 432.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 431.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 431.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 431.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 429.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 428.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 428.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 428.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 427.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 427.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 426.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 426.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 423.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 420.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 420.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 419.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 419.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 415.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 413.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 413.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 411.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 411.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 410.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 410.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 408.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 408.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 407.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 405.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 403.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 402.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 400.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 400.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 400.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 400.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 398.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 397.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 397.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 396.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 396.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 395.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 394.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 394.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 394.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 393.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 390.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 390.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 389.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 385.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 384.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 384.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 384.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 381.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 379.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 379.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 379.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 377.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 375.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 375.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 375.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 375.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 374.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 374.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 372.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 372.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 371.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 371.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 371.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 371.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 371.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 366.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 365.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 365.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 364.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 363.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 362.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 362.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 361.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 359.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 358.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 358.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 357.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 354.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 354.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 352.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 350.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 349.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 348.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 347.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 346.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 346.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 345.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 345.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 345.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 345.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 343.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 342.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 342.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 337.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 335.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 332.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 332.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 331.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 331.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 330.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 329.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 329.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 329.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 328.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 327.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 321.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 321.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 318.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 317.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 314.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 314.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 313.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 307.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 304.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 303.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 300.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 298.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 297.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 296.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 295.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 292.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 289.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 287.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 283.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 283.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 280.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 280.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 278.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 272.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 269.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 268.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 267.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 261.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 257.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 257.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 256.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 251.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 250.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 247.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 247.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 245.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 241.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 240.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 226.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1319.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1319.5
FF:10164-103B2 76 years, female 1319.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

913.2
Pig sample Sample description nTPM
Caudate
nTPM: 913.2
Samples: 4

Max nTPM: 963.1
Min nTPM: 862.8
Sample A Female 862.8
Sample B Female 929.6
Sample C Male 963.1
Sample D Male 897.2

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