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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:76.1 nTPM
HPA Brain:344.8 nTPM
GTEx:76.1 nTPM
FANTOM5:589.9 Scaled Tags Per Million
Pig:111.8 nTPM
Mouse:104.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.8
Sample id Sample description nTPM
Amygdala
nTPM: 224.7
2814 Male, age 76, right hemisphere 268.6
2517 Female, age 94, left hemisphere 252.7
1987 Female, age 91, left hemisphere 234.2
2514 Male, age 75, right hemisphere 194.3
2695 Female, age 67, right hemisphere 173.4
Basal amygdala
nTPM: 344.8
2685 Female, age 94, left hemisphere 414.1
2827 Female, age 67, right hemisphere 398.8
2243 Female, age 91, right hemisphere 378.0
2110 Male, age 80, left hemisphere 313.1
1955 Male, age 76, both hemispheres 294.0
2609 Male, age 75, right hemisphere 270.8
Central amygdala
nTPM: 284.6
2239 Male, age 80, left hemisphere 312.4
2826 Female, age 94, left hemisphere 288.9
1905 Male, age 76, both hemispheres 285.3
2515 Male, age 75, right hemisphere 273.3
2701 Female, age 91, right hemisphere 263.0
Corticomedial amygdala
nTPM: 323.2
2535 Female, age 67, right hemisphere 450.6
2242 Female, age 91, right hemisphere 344.4
2829 Male, age 80, left hemisphere 340.4
2429 Female, age 94, left hemisphere 314.7
2240 Male, age 76, both hemispheres 256.9
2428 Male, age 75, right hemisphere 232.1
Lateral amygdala
nTPM: 274.0
2256 Male, age 80, left hemisphere 327.0
2255 Female, age 91, right hemisphere 313.2
2534 Female, age 94, left hemisphere 312.6
1883 Male, age 76, both hemispheres 259.4
2830 Female, age 67, right hemisphere 225.4
2516 Male, age 75, right hemisphere 206.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 76.1
Samples: 181

Max nTPM: 184.0
Min nTPM: 18.4
Std nTPM: 31.0
Median nTPM: 70.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 184.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 162.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 154.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 154.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 147.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 138.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 133.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 133.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 131.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 128.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 128.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 126.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 123.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 122.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 120.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 120.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 118.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 117.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 117.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 116.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 116.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 114.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 113.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 112.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 110.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 110.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 109.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 109.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 108.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 107.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 106.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 105.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 104.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 104.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 103.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 103.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 102.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 102.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 102.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 102.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 101.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 100.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 99.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 99.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 99.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 99.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 98.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 96.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 96.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 95.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 95.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 95.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 95.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 94.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 92.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 91.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 91.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 90.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 88.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 88.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 87.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 87.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 86.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 86.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 85.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 84.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 84.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 84.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 83.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 83.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 82.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 82.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 81.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 81.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 81.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 81.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 80.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 79.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 78.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 76.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 76.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 75.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 75.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 75.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 75.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 73.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 72.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 72.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 71.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 70.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 70.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 69.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 69.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 68.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 67.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 67.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 66.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 66.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 66.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 66.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 66.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 65.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 65.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 65.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 64.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 64.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 63.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 63.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 63.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 63.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 62.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 62.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 62.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 62.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 61.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 61.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 61.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 61.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 61.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 61.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 60.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 59.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 59.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 58.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 58.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 58.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 57.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 57.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 56.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 55.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 55.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 55.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 55.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 55.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 54.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 54.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 54.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 50.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 50.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 48.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 48.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 47.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 46.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 46.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 46.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 46.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 45.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 44.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 44.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 44.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 44.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 43.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 43.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 42.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 42.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 41.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 41.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 39.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 39.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 39.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 39.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 39.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 38.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 38.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 38.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 37.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 36.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 35.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 35.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 35.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 34.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 34.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 33.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 32.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 31.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 31.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 31.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 30.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 26.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 25.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 18.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

589.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 589.9
FF:10151-102I7 76 years, female 589.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.8
Pig sample Sample description nTPM
Amygdala
nTPM: 111.8
Samples: 4

Max nTPM: 130.5
Min nTPM: 90.8
Sample A Female 130.5
Sample B Female 90.8
Sample C Male 109.5
Sample D Male 116.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 104.5
Samples: 4

Max nTPM: 113.9
Min nTPM: 93.2
Sample A Male 113.9
Sample B Male 93.2
Sample C Female 112.3
Sample D Female 98.4

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