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  • NDUFS8
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:158.7 nTPM
HPA Brain:93.6 nTPM
GTEx:158.7 nTPM
FANTOM5:106.9 Scaled Tags Per Million
Pig:73.5 nTPM
Mouse:194.5 nTPM
Allen mouse:6.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.6
Sample id Sample description nTPM
Amygdala
nTPM: 93.6
2814 Male, age 76, right hemisphere 110.4
2695 Female, age 67, right hemisphere 99.1
1987 Female, age 91, left hemisphere 90.2
2517 Female, age 94, left hemisphere 85.4
2514 Male, age 75, right hemisphere 82.9
Basal amygdala
nTPM: 83.9
2110 Male, age 80, left hemisphere 91.0
2609 Male, age 75, right hemisphere 90.2
2685 Female, age 94, left hemisphere 87.2
1955 Male, age 76, both hemispheres 85.8
2243 Female, age 91, right hemisphere 84.6
2827 Female, age 67, right hemisphere 64.7
Central amygdala
nTPM: 92.0
1905 Male, age 76, both hemispheres 109.1
2826 Female, age 94, left hemisphere 98.0
2515 Male, age 75, right hemisphere 91.3
2239 Male, age 80, left hemisphere 89.6
2701 Female, age 91, right hemisphere 71.8
Corticomedial amygdala
nTPM: 82.6
2428 Male, age 75, right hemisphere 89.8
2242 Female, age 91, right hemisphere 89.1
2829 Male, age 80, left hemisphere 88.1
2429 Female, age 94, left hemisphere 83.0
2240 Male, age 76, both hemispheres 77.1
2535 Female, age 67, right hemisphere 68.7
Lateral amygdala
nTPM: 83.4
1883 Male, age 76, both hemispheres 100.6
2534 Female, age 94, left hemisphere 100.2
2516 Male, age 75, right hemisphere 91.1
2255 Female, age 91, right hemisphere 78.4
2256 Male, age 80, left hemisphere 69.6
2830 Female, age 67, right hemisphere 60.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 158.7
Samples: 181

Max nTPM: 432.1
Min nTPM: 85.0
Std nTPM: 49.8
Median nTPM: 150.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 432.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 373.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 357.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 344.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 320.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 276.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 240.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 237.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 234.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 232.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 229.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 224.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 224.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 224.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 222.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 217.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 215.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 214.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 212.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 209.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 209.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 208.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 206.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 204.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 196.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 196.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 193.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 193.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 193.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 192.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 192.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 192.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 189.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 187.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 187.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 187.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 187.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 184.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 184.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 184.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 180.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 180.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 179.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 179.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 179.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 176.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 176.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 175.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 174.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 172.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 171.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 171.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 171.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 171.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 169.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 169.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 167.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 166.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 164.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 164.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 163.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 163.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 163.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 163.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 163.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 162.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 161.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 160.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 160.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 159.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 159.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 158.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 158.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 157.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 157.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 157.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 157.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 156.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 154.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 154.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 153.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 153.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 153.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 152.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 151.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 151.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 151.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 151.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 151.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 150.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 150.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 149.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 149.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 148.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 148.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 147.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 146.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 145.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 145.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 145.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 144.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 144.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 144.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 141.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 141.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 141.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 140.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 140.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 140.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 140.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 140.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 139.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 139.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 139.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 138.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 137.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 136.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 136.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 136.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 135.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 135.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 135.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 134.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 134.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 133.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 133.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 133.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 133.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 132.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 131.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 131.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 130.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 130.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 130.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 130.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 129.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 128.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 127.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 125.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 124.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 124.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 123.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 123.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 123.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 122.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 122.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 122.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 121.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 121.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 120.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 120.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 119.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 119.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 118.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 117.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 116.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 115.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 115.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 115.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 112.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 112.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 112.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 111.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 110.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 110.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 107.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 104.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 103.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 103.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 102.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 101.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 100.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 100.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 99.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 98.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 97.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 97.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 95.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 93.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 89.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 85.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

106.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 106.9
FF:10151-102I7 76 years, female 106.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.5
Pig sample Sample description nTPM
Amygdala
nTPM: 73.5
Samples: 4

Max nTPM: 98.2
Min nTPM: 61.2
Sample A Female 98.2
Sample B Female 66.4
Sample C Male 68.1
Sample D Male 61.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 194.5
Samples: 4

Max nTPM: 201.5
Min nTPM: 187.4
Sample A Male 187.4
Sample B Male 201.5
Sample C Female 196.1
Sample D Female 193.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.8
74819243 Antisense, RP_060315_02_C07, Mouse strain C57BL/6J (56 days, male) 7.2
68910967 Antisense, RP_050118_01_A01, Mouse strain C57BL/6J (56 days, male) 6.4

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