MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.1 nTPM
HPA Brain:68.2 nTPM
GTEx:26.1 nTPM
FANTOM5:81.8 Scaled Tags Per Million
Pig:59.9 nTPM
Mouse:47.6 nTPM
Allen mouse:5.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 68.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.9
2666 Male, age 74, left hemisphere 71.5
2586 Male, age 75, left hemisphere 59.7
1830 Male, age 51, unknown 59.5
2828 Female, age 72, unknown 59.0
1833 Male, age 53, unknown 58.5
1870 Female, age 42, unknown 56.5
2411 Female, age 72, unknown 54.6
1827 Male, age 72, unknown 52.4
2019 Male, age 18, unknown 49.4
2219 Male, age 76, both hemispheres 48.1
Dorsal raphe nucleus
nTPM: 54.8
2016 Female, age 72, unknown 60.1
2047 Male, age 72, unknown 57.5
2750 Male, age 76, both hemispheres 57.4
1828 Male, age 53, unknown 50.1
2298 Female, age 72, unknown 48.7
Inferior colliculus
nTPM: 50.7
2849 Male, age 72, unknown 52.5
1890 Male, age 53, unknown 51.5
2097 Female, age 72, unknown 50.0
1848 Female, age 42, unknown 49.0
Median raphe nucleus
nTPM: 54.3
2220 Male, age 76, midline 54.3
Periaquaductal grey, anterior
nTPM: 54.3
1947 Male, age 18, unknown 57.6
2502 Female, age 75, unknown 56.1
1795 Male, age 51, unknown 49.2
Periaquaductal grey, dorsal
nTPM: 51.5
1840 Male, age 53, unknown 54.9
1831 Male, age 72, unknown 54.1
2464 Female, age 72, unknown 49.1
2850 Male, age 76, both hemispheres 47.8
Periaquaductal grey, lateral
nTPM: 51.2
2272 Male, age 74, both hemispheres 55.2
2053 Male, age 18, unknown 54.1
2140 Male, age 76, both hemispheres 44.5
Pretectal area
nTPM: 54.5
2407 Male, age 75, both hemispheres 69.6
2316 Male, age 76, right hemisphere 58.8
2273 Male, age 74, both hemispheres 58.0
2825 Male, age 18, unknown 57.8
1944 Female, age 72, unknown 54.3
1817 Female, age 42, unknown 53.7
1815 Male, age 53, unknown 53.6
2007 Male, age 72, unknown 53.4
2224 Female, age 72, unknown 53.2
1816 Male, age 51, unknown 48.1
2667 Female, age 75, unknown 38.8
Red nucleus
nTPM: 56.3
2725 Female, age 75, unknown 67.2
2584 Male, age 75, left hemisphere 59.6
1865 Male, age 51, unknown 59.1
2503 Female, age 72, unknown 59.0
2588 Male, age 74, left hemisphere 57.4
1821 Female, age 72, unknown 57.0
1904 Male, age 53, unknown 56.5
2785 Male, age 18, unknown 54.3
2823 Male, age 76, right hemisphere 53.7
2227 Male, age 72, unknown 51.0
1954 Female, age 42, unknown 50.5
2769 Male, age 72, unknown 50.5
Substantia nigra
nTPM: 68.2
2241 Male, age 72, unknown 85.4
2590 Female, age 75, unknown 74.7
1916 Female, age 42, unknown 74.4
1851 Male, age 51, unknown 70.6
2699 Male, age 18, unknown 70.6
2583 Male, age 75, right hemisphere 67.9
2665 Male, age 74, both hemispheres 66.1
1941 Male, age 53, unknown 61.6
2409 Female, age 72, unknown 60.6
1889 Female, age 72, unknown 49.9
Superior colliculus
nTPM: 56.6
2664 Male, age 75, both hemispheres 70.6
2587 Male, age 74, left hemisphere 66.0
1839 Male, age 51, unknown 57.6
2668 Female, age 75, unknown 57.1
1796 Male, age 53, unknown 55.9
1913 Female, age 42, unknown 55.5
2261 Male, age 18, unknown 52.9
1995 Male, age 72, unknown 51.8
2087 Female, age 72, unknown 51.0
1895 Male, age 76, right hemisphere 48.1
Ventral tegmental area
nTPM: 59.2
1915 Female, age 42, unknown 64.4
2021 Male, age 53, unknown 63.5
1942 Male, age 51, unknown 61.7
2223 Female, age 72, unknown 58.4
2410 Female, age 72, unknown 56.6
2218 Male, age 76, both hemispheres 50.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.1
Samples: 183

Max nTPM: 47.2
Min nTPM: 12.7
Std nTPM: 5.5
Median nTPM: 24.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 47.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 45.6
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 44.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 44.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 43.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 41.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 39.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 38.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 38.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 37.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 37.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 81.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 81.8
FF:10158-103A5 76 years, female 81.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.4
Samples: 4

Max nTPM: 70.3
Min nTPM: 45.4
Sample A Female 70.3
Sample B Female 51.9
Sample C Male 66.0
Sample D Male 45.4
Midbrain
nTPM: 59.9
Samples: 4

Max nTPM: 69.9
Min nTPM: 50.9
Sample A Female 69.9
Sample B Female 53.8
Sample C Male 50.9
Sample D Male 65.0
Periaqueductal gray
nTPM: 48.4
Samples: 3

Max nTPM: 53.4
Min nTPM: 44.3
Sample B Female 47.5
Sample C Male 53.4
Sample D Male 44.3
Superior colliculi
nTPM: 55.7
Samples: 4

Max nTPM: 66.0
Min nTPM: 38.9
Sample A Female 66.0
Sample B Female 38.9
Sample C Male 53.9
Sample D Male 64.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 47.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.6
Samples: 4

Max nTPM: 48.5
Min nTPM: 46.6
Sample A Male 48.5
Sample B Male 47.8
Sample C Female 46.6
Sample D Female 47.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
68637748 Antisense, RP_050126_01_E08, Mouse strain C57BL/6J (56 days, male) 6.1
75651191 Antisense, RP_060518_01_C08, Mouse strain C57BL/6J (56 days, male) 5.3

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