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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:34.4 nTPM
HPA Brain:95.2 nTPM
GTEx:34.4 nTPM
FANTOM5:84.1 Scaled Tags Per Million
Pig:37.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 95.2
2048 Male, age 55, midline 129.7
1981 Female, age 72, midline 123.6
2565 Male, age 75, midline 80.4
2816 Male, age 47, midline 79.1
2194 Female, age 79, both hemispheres 63.2
Cervical spinal cord, dorsal horn
nTPM: 64.1
2173 Female, age 72, unknown 85.6
2721 Male, age 90, both hemispheres 82.4
2296 Male, age 66, both hemispheres 72.9
2069 Male, age 47, both hemispheres 62.2
1877 Male, age 55, unknown 55.4
2297 Male, age 75, both hemispheres 26.1
Cervical spinal cord, ventral horn
nTPM: 74.3
2098 Female, age 72, unknown 144.4
2809 Male, age 90, both hemispheres 84.5
2295 Male, age 66, both hemispheres 84.3
2068 Male, age 55, unknown 51.2
2820 Female, age 79, both hemispheres 45.5
2480 Male, age 75, both hemispheres 35.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 34.4
Samples: 204

Max nTPM: 152.0
Min nTPM: 3.5
Std nTPM: 22.8
Median nTPM: 28.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 152.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 113.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 113.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 108.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 97.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 81.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 80.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 77.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 76.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 75.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 74.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 74.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 73.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 69.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 69.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 67.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 66.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 66.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 65.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 65.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 64.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 62.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 62.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 61.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 61.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 61.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 59.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 59.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 59.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 58.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 58.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 58.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 56.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 55.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 55.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 55.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 52.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 52.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 52.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 51.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 51.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 51.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 50.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 50.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 50.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 50.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 49.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 48.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 48.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 48.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 47.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 47.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 46.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 46.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 46.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 45.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 43.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 43.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 43.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 42.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 42.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 41.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 40.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 39.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 39.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 38.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 38.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 38.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 38.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 37.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 37.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 37.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 37.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 36.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 36.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 36.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 36.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 36.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 36.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 35.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 34.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 34.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 34.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 34.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 33.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 33.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 33.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 33.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 33.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 33.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 32.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 31.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 31.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 30.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 30.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 30.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 30.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 29.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 29.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 29.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 29.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 28.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 28.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 28.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 27.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 27.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 27.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 27.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 27.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 26.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 26.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 26.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 26.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 26.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 25.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 25.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 25.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 25.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 24.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 24.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 24.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 24.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 24.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 23.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 23.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 22.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 22.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 22.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 22.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 22.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 22.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 22.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 21.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 21.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 20.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 20.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 20.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 20.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 20.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 20.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 20.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 19.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 19.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 19.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 19.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 18.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 18.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 18.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 18.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 18.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 18.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 17.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 17.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 17.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 17.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 16.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 16.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 16.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 16.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 16.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 15.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 15.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 15.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 15.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 15.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 15.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 15.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 14.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 14.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 14.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 14.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 14.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 13.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 13.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 13.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 13.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 13.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 13.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 12.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 12.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 12.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 12.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 12.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 11.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 11.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 11.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 11.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 11.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 11.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 10.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 10.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 9.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 9.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 8.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 8.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 7.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 7.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 6.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 6.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 6.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 5.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 5.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 5.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 3.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

84.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 84.1
FF:10181-103D1 60 years, female 125.8
FF:10159-103A6 76 years, female 42.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 26.1
Samples: 4

Max nTPM: 49.2
Min nTPM: 11.9
Sample A Female 29.5
Sample B Female 13.6
Sample C Male 11.9
Sample D Male 49.2
Ventral spinal cord
nTPM: 37.2
Samples: 4

Max nTPM: 45.8
Min nTPM: 30.5
Sample A Female 45.8
Sample B Female 30.5
Sample C Male 38.5
Sample D Male 33.8

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