We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
80.0
Sample id
Sample description
nTPM
Amygdala nTPM: 45.2
2517
Female, age 94, left hemisphere
61.3
2814
Male, age 76, right hemisphere
44.5
1987
Female, age 91, left hemisphere
42.1
2514
Male, age 75, right hemisphere
40.3
2695
Female, age 67, right hemisphere
37.7
Basal amygdala nTPM: 80.0
2243
Female, age 91, right hemisphere
94.7
2827
Female, age 67, right hemisphere
88.5
2110
Male, age 80, left hemisphere
86.3
2685
Female, age 94, left hemisphere
82.7
1955
Male, age 76, both hemispheres
68.3
2609
Male, age 75, right hemisphere
59.5
Central amygdala nTPM: 66.1
2826
Female, age 94, left hemisphere
120.8
2239
Male, age 80, left hemisphere
84.2
2701
Female, age 91, right hemisphere
43.5
2515
Male, age 75, right hemisphere
41.8
1905
Male, age 76, both hemispheres
40.2
Corticomedial amygdala nTPM: 78.9
2829
Male, age 80, left hemisphere
116.6
2535
Female, age 67, right hemisphere
88.1
2429
Female, age 94, left hemisphere
79.4
2240
Male, age 76, both hemispheres
66.4
2242
Female, age 91, right hemisphere
64.3
2428
Male, age 75, right hemisphere
58.8
Lateral amygdala nTPM: 76.6
2534
Female, age 94, left hemisphere
139.7
2256
Male, age 80, left hemisphere
85.5
2830
Female, age 67, right hemisphere
68.2
2255
Female, age 91, right hemisphere
59.2
1883
Male, age 76, both hemispheres
56.4
2516
Male, age 75, right hemisphere
50.5
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 52.9
Samples: 181
Max nTPM: 149.4
Min nTPM: 10.9
Std nTPM: 29.9
Median nTPM: 44.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
149.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
136.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
132.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
130.4
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
118.5
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
118.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
114.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
112.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
110.8
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
110.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
110.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
107.7
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
105.5
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
105.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
104.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
101.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
100.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
98.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
97.3
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
96.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
94.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
94.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
93.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
91.4
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
90.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
89.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
87.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
86.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
86.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
85.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
84.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
83.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
82.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
82.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
81.2
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
80.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
80.5
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
79.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
77.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
77.5
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
77.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
77.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
77.0
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
75.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
75.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
73.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
71.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
69.8
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
68.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
68.1
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
67.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
65.6
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
64.8
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
64.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
64.2
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
63.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
63.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
63.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
62.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
61.8
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
60.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
60.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
60.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
59.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
58.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
57.0
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
55.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
55.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
55.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
55.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
52.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
52.2
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
51.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
51.5
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
51.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
51.4
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
49.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
49.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
49.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
49.6
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
49.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
49.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
48.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
48.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
48.0
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
47.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
47.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
47.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
46.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
46.0
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
44.8
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
44.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
43.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
43.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
42.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
42.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
41.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
41.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
41.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
41.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
41.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
40.9
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
40.1
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
39.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
38.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
38.0
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
37.7
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
37.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
37.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
37.1
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
36.9
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
36.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
36.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
36.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
36.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
36.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
36.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
35.9
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
35.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
34.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
34.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
34.3
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
34.1
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
34.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
33.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
33.3
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
33.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
32.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
31.2
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
31.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
30.9
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
30.7
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
30.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
30.3
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
30.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
29.6
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
29.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
28.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
28.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
27.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
27.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
27.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
27.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
27.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
26.3
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
26.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
26.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
26.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
25.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
25.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
25.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
24.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
24.6
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
24.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
24.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
23.5
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
23.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
23.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
22.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
22.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
21.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
21.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
20.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
20.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
19.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
19.7
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
19.0
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
18.7
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
18.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
18.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
18.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
17.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
16.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
16.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
16.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
14.2
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
13.9
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
13.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
13.7
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
11.2
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
10.9
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.1
Pig sample
Sample description
nTPM
Amygdala nTPM: 48.1
Samples: 4
Max nTPM: 69.1
Min nTPM: 27.8
Sample A
Female
69.1
Sample B
Female
27.8
Sample C
Male
41.7
Sample D
Male
53.9
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
78.3
Mouse sample
Sample description
nTPM
Amygdala nTPM: 78.3
Samples: 4
Max nTPM: 106.2
Min nTPM: 63.1
Sample A
Male
63.1
Sample B
Male
72.8
Sample C
Female
106.2
Sample D
Female
71.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
