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ATP5F1B
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • ATP5F1B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:309.6 nTPM
FANTOM5:238.7 Scaled Tags Per Million
Pig:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001520Antibody HPA001528Antibody CAB017527
Glial cells Not detectedMediumNot detected
Neuronal cells MediumMediumLow







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

309.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 309.6
Samples: 300

Max nTPM: 883.3
Min nTPM: 128.5
Std nTPM: 87.6
Median nTPM: 300.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 883.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 584.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 556.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 548.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 528.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 511.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 499.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 496.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 494.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 477.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 477.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 475.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 471.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 470.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 461.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 460.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 459.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 457.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 455.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 451.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 448.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 447.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 444.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 443.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 438.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 436.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 435.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 433.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 429.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 428.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 427.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 426.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 425.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 421.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 421.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 416.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 407.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 407.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 404.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 404.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 401.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 397.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 396.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 392.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 390.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 388.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 387.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 386.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 386.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 384.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 379.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 379.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 377.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 376.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 375.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 375.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 372.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 370.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 370.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 370.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 369.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 369.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 369.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 369.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 368.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 366.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 365.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 364.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 364.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 363.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 362.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 359.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 358.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 357.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 356.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 356.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 353.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 353.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 352.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 350.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 349.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 348.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 348.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 348.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 346.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 345.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 344.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 344.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 343.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 343.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 342.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 341.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 341.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 340.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 338.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 336.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 332.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 332.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 332.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 331.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 331.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 330.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 329.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 326.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 326.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 326.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 326.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 325.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 324.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 324.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 320.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 319.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 319.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 318.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 317.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 317.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 317.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 316.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 316.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 316.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 316.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 316.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 316.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 316.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 315.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 314.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 313.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 313.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 313.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 312.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 312.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 311.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 310.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 310.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 310.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 309.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 309.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 309.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 308.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 307.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 306.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 305.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 305.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 304.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 304.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 303.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 302.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 301.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 301.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 301.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 299.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 299.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 299.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 299.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 298.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 298.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 298.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 297.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 296.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 296.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 296.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 296.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 295.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 295.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 295.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 294.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 294.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 292.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 290.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 290.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 288.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 288.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 286.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 286.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 285.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 283.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 283.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 280.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 279.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 277.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 276.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 275.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 275.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 275.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 274.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 274.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 273.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 273.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 272.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 272.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 271.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 269.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 269.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 268.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 268.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 268.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 268.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 268.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 267.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 267.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 266.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 265.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 263.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 263.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 262.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 262.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 261.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 261.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 260.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 259.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 257.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 257.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 255.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 255.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 253.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 253.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 252.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 252.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 251.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 250.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 250.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 249.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 249.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 248.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 247.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 246.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 246.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 246.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 244.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 243.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 242.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 242.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 241.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 241.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 241.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 241.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 241.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 240.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 239.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 239.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 239.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 238.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 238.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 237.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 236.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 236.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 235.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 232.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 232.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 231.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 230.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 229.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 228.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 226.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 226.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 226.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 226.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 226.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 224.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 223.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 222.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 219.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 219.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 218.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 218.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 217.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 217.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 217.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 215.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 215.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 214.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 209.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 208.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 208.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 208.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 208.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 206.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 205.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 204.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 203.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 203.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 202.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 192.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 192.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 188.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 188.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 184.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 184.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 184.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 182.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 181.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 180.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 178.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 177.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 165.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 160.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 154.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 152.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 145.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 128.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

238.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 238.7
FF:10164-103B2 76 years, female 238.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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