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ARHGDIB
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  • ARHGDIB
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:201.6 nTPM
HPA:103.0 nTPM
GTEx:201.6 nTPM
FANTOM5:212.7 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051235Antibody CAB018584
Endocrine cells -Not detected
Enterocytes -Not detected
Enterocytes - Microvilli -Not detected
Glandular cells Not detected-
Goblet cells -Not detected
Paneth cells -Not detected





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.0
overview
Male, age 65
Small intestine sample 232
nTPM: 93.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 109.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 123
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 86.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 201.6
Samples: 207

Max nTPM: 760.9
Min nTPM: 32.9
Std nTPM: 151.2
Median nTPM: 140.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 760.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 671.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 610.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 582.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 560.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 559.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 558.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 558.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 543.1
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 540.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 522.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 510.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 488.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 480.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 474.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 464.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 449.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 446.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 445.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 442.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 438.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 420.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 417.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 415.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 413.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 410.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 404.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 391.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 390.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 376.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 371.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 368.3
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 365.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 361.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 354.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 346.0
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 345.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 344.9
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 342.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 342.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 337.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 335.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 332.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 327.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 317.2
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 313.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 306.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 304.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 301.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 297.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 296.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 294.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 294.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 293.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 292.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 286.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 286.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 285.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 269.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 255.0
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 253.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 252.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 246.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 245.2
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 242.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 242.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 242.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 241.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 240.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 238.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 237.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 231.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 227.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 222.0
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 220.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 218.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 217.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 214.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 214.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 210.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 208.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 208.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 207.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 199.0
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 195.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 190.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 187.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 178.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 169.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 162.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 162.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 153.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 153.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 151.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 149.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 149.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 149.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 144.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 144.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 143.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 142.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 141.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 140.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 140.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 138.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 138.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 137.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 137.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 135.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 134.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 133.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 130.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 129.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 129.3
GTEX-1192X-2526-SM-59868 50-59 years, male 128.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 126.7
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 125.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 121.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 119.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 119.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 118.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 114.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 113.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 112.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 111.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 111.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 109.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 109.1
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 108.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 105.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 105.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 103.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 97.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 96.6
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 95.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 94.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 94.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 94.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 93.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 93.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 92.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 92.6
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 92.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 92.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 92.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 91.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 91.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 90.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 89.8
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 89.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 88.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 88.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 87.5
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 86.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 85.1
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 85.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 84.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 83.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 81.1
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 81.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 78.4
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 78.3
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 78.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 78.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 77.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 76.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 75.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 71.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 70.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 70.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 70.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 68.9
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 68.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 68.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 68.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 67.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 67.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 67.3
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 66.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 65.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 63.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 63.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 63.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 63.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 62.5
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 60.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 60.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 59.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 59.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 58.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 57.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 53.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 53.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 53.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 53.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 52.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 52.1
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 51.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 50.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 45.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 45.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 43.7
GTEX-178AV-1226-SM-GOR11 40-49 years, male 43.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 41.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 40.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 38.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 32.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

212.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 212.7
FF:10024-101D6 15,40,85 years, mixed 212.7

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