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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1573.2 nTPM
GTEx:1573.2 nTPM
FANTOM5:261.7 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1573.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1573.2
Samples: 105

Max nTPM: 3795.0
Min nTPM: 739.7
Std nTPM: 457.6
Median nTPM:
218_1 71 years, female 3795.0
375_1 74 years, female 2696.4
6_1 73 years, female 2615.6
322_1 76 years, male 2611.0
379_1 60 years, male 2549.9
447_1 81 years, male 2297.9
307_1 66 years, female 2287.8
321_1 62 years, female 2274.2
316_1 62 years, male 2273.7
386_1 76 years, male 2269.4
145_1 84 years, male 2153.2
35_1 74 years, female 2151.7
237_1 82 years, male 2140.9
4_1 88 years, female 2045.8
2_1 77 years, female 2031.7
173_1 67 years, male 2022.5
353_1 82 years, female 1954.5
384_1 83 years, male 1940.9
319_1 81 years, male 1914.9
354_1 81 years, female 1895.9
318_1 68 years, male 1891.8
347_1 72 years, male 1889.2
317_1 60 years, male 1878.2
350_1 84 years, female 1869.9
172_1 72 years, female 1832.9
377_1 82 years, female 1826.1
389_1 86 years, female 1789.1
120_1 70 years, female 1709.0
311_1 78 years, male 1702.4
153_1 70 years, female 1697.7
518_1 75 years, female 1671.1
376_1 75 years, female 1671.0
243_1 75 years, male 1669.9
41_1 94 years, female 1659.0
17_1 71 years, male 1649.3
348_1 84 years, male 1647.8
425_1 59 years, female 1629.7
163_1 78 years, male 1626.0
495_1 57 years, female 1617.5
139_1 64 years, female 1608.1
335_1 73 years, female 1603.5
43_1 64 years, female 1601.3
352_1 62 years, male 1584.9
126_1 63 years, male 1576.4
308_1 70 years, female 1554.2
117_1 61 years, male 1544.7
137_1 83 years, male 1525.3
291_1 76 years, male 1517.4
405_1 91 years, male 1516.4
355_1 70 years, female 1497.6
177_1 74 years, male 1495.1
246_1 77 years, male 1469.4
320_1 89 years, female 1461.7
42_1 85 years, male 1448.8
526_1 61 years, male 1445.7
404_1 82 years, female 1440.8
189_1 76 years, male 1439.3
480_1 63 years, male 1435.4
115_1 83 years, male 1431.2
286_1 68 years, female 1431.2
295_1 61 years, female 1427.7
229_1 69 years, female 1422.4
293_1 68 years, female 1413.1
18_1 88 years, male 1411.3
349_1 83 years, male 1401.6
396_1 62 years, male 1391.0
452_1 88 years, female 1382.6
506_1 65 years, male 1375.7
324_1 76 years, male 1373.5
292_1 71 years, male 1371.2
468_1 89 years, male 1358.1
356_1 87 years, female 1351.0
394_1 75 years, female 1339.1
265_1 87 years, male 1333.6
503_1 68 years, male 1314.9
9_1 66 years, female 1311.1
351_1 91 years, male 1308.6
142_1 61 years, female 1307.9
313_1 79 years, female 1286.1
288_1 66 years, female 1283.7
499_1 55 years, female 1278.6
217_1 76 years, male 1272.9
266_1 85 years, male 1267.6
254_1 77 years, female 1264.3
119_1 70 years, female 1251.9
251_1 78 years, male 1241.7
99_1 64 years, male 1232.3
517_1 88 years, male 1227.7
315_1 62 years, female 1222.5
264_1 73 years, female 1214.3
406_1 79 years, male 1196.7
81_1 67 years, male 1196.3
314_1 67 years, male 1182.3
162_1 79 years, female 1155.3
109_1 81 years, female 1139.4
415_1 77 years, female 1036.1
490_1 67 years, female 1022.8
466_1 57 years, female 1002.9
414_1 84 years, female 996.9
32_1 67 years, male 965.3
89_1 63 years, male 949.5
501_1 88 years, male 881.3
491_1 89 years, female 841.4
149_1 88 years, male 761.1
413_1 59 years, female 739.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

261.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 261.7
FF:10030-101E3 24-65 years, mixed 261.7

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