MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.2 nTPM
HPA Brain:80.2 nTPM
GTEx:63.2 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:72.5 nTPM
Mouse:107.5 nTPM
Allen mouse:17.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 80.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.3
2219 Male, age 76, both hemispheres 62.0
2411 Female, age 72, unknown 55.4
2666 Male, age 74, left hemisphere 47.3
1827 Male, age 72, unknown 46.3
1833 Male, age 53, unknown 43.3
1870 Female, age 42, unknown 42.7
2019 Male, age 18, unknown 41.3
2586 Male, age 75, left hemisphere 40.6
1830 Male, age 51, unknown 40.0
2828 Female, age 72, unknown 33.8
Dorsal raphe nucleus
nTPM: 51.5
2298 Female, age 72, unknown 59.7
2047 Male, age 72, unknown 56.6
2750 Male, age 76, both hemispheres 51.8
1828 Male, age 53, unknown 49.5
2016 Female, age 72, unknown 39.9
Inferior colliculus
nTPM: 38.7
2097 Female, age 72, unknown 46.3
1890 Male, age 53, unknown 38.6
1848 Female, age 42, unknown 35.9
2849 Male, age 72, unknown 34.0
Median raphe nucleus
nTPM: 64.7
2220 Male, age 76, midline 64.7
Periaquaductal grey, anterior
nTPM: 48.0
1947 Male, age 18, unknown 50.7
2502 Female, age 75, unknown 48.7
1795 Male, age 51, unknown 44.4
Periaquaductal grey, dorsal
nTPM: 40.0
1840 Male, age 53, unknown 45.7
2464 Female, age 72, unknown 39.6
1831 Male, age 72, unknown 38.1
2850 Male, age 76, both hemispheres 36.6
Periaquaductal grey, lateral
nTPM: 35.8
2053 Male, age 18, unknown 39.5
2272 Male, age 74, both hemispheres 35.2
2140 Male, age 76, both hemispheres 32.7
Pretectal area
nTPM: 44.2
1816 Male, age 51, unknown 54.7
2007 Male, age 72, unknown 51.1
1944 Female, age 72, unknown 50.6
2224 Female, age 72, unknown 48.3
1817 Female, age 42, unknown 48.0
1815 Male, age 53, unknown 46.0
2825 Male, age 18, unknown 40.9
2273 Male, age 74, both hemispheres 38.7
2407 Male, age 75, both hemispheres 37.1
2667 Female, age 75, unknown 36.8
2316 Male, age 76, right hemisphere 33.5
Red nucleus
nTPM: 40.4
2725 Female, age 75, unknown 53.9
1821 Female, age 72, unknown 50.9
2588 Male, age 74, left hemisphere 48.2
1954 Female, age 42, unknown 41.8
2584 Male, age 75, left hemisphere 40.9
1904 Male, age 53, unknown 39.0
2503 Female, age 72, unknown 38.5
2227 Male, age 72, unknown 35.5
2785 Male, age 18, unknown 35.5
2769 Male, age 72, unknown 34.9
1865 Male, age 51, unknown 34.0
2823 Male, age 76, right hemisphere 32.0
Substantia nigra
nTPM: 80.2
1916 Female, age 42, unknown 125.0
2241 Male, age 72, unknown 124.9
2409 Female, age 72, unknown 101.3
1851 Male, age 51, unknown 92.0
1941 Male, age 53, unknown 76.0
2699 Male, age 18, unknown 72.0
2665 Male, age 74, both hemispheres 60.9
1889 Female, age 72, unknown 57.8
2590 Female, age 75, unknown 50.7
2583 Male, age 75, right hemisphere 41.3
Superior colliculus
nTPM: 40.3
2668 Female, age 75, unknown 50.9
1796 Male, age 53, unknown 47.0
2261 Male, age 18, unknown 45.9
2087 Female, age 72, unknown 43.1
1839 Male, age 51, unknown 42.1
2587 Male, age 74, left hemisphere 39.1
1895 Male, age 76, right hemisphere 37.5
2664 Male, age 75, both hemispheres 37.5
1913 Female, age 42, unknown 32.7
1995 Male, age 72, unknown 26.7
Ventral tegmental area
nTPM: 66.7
2218 Male, age 76, both hemispheres 82.9
1915 Female, age 42, unknown 82.1
2410 Female, age 72, unknown 80.7
1942 Male, age 51, unknown 56.4
2223 Female, age 72, unknown 49.2
2021 Male, age 53, unknown 48.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 63.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.2
Samples: 183

Max nTPM: 200.8
Min nTPM: 23.6
Std nTPM: 35.7
Median nTPM: 50.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 200.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 194.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 193.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 187.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 163.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 160.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 159.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 159.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 138.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 134.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 132.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 72.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.0
Samples: 4

Max nTPM: 99.8
Min nTPM: 37.5
Sample A Female 99.8
Sample B Female 50.5
Sample C Male 88.3
Sample D Male 37.5
Midbrain
nTPM: 69.3
Samples: 4

Max nTPM: 95.3
Min nTPM: 44.6
Sample A Female 44.6
Sample B Female 62.1
Sample C Male 95.3
Sample D Male 75.3
Periaqueductal gray
nTPM: 59.9
Samples: 3

Max nTPM: 77.0
Min nTPM: 51.2
Sample B Female 51.4
Sample C Male 77.0
Sample D Male 51.2
Superior colliculi
nTPM: 72.6
Samples: 4

Max nTPM: 91.3
Min nTPM: 42.9
Sample A Female 87.9
Sample B Female 42.9
Sample C Male 91.3
Sample D Male 68.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 107.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.5
Samples: 4

Max nTPM: 111.0
Min nTPM: 103.9
Sample A Male 103.9
Sample B Male 109.8
Sample C Female 105.3
Sample D Female 111.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.7
67767470 Antisense, RP_040916_02_B10, Mouse strain C57BL/6J (56 days, male) 17.7

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