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TPD52L1
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  • TPD52L1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:106.3 nTPM
HPA Brain:44.1 nTPM
GTEx:106.3 nTPM
FANTOM5:239.7 Scaled Tags Per Million
Pig:41.6 nTPM
Mouse:52.5 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.1
Sample id Sample description nTPM
Amygdala
nTPM: 29.6
2514 Male, age 75, right hemisphere 45.7
2517 Female, age 94, left hemisphere 38.2
1987 Female, age 91, left hemisphere 34.1
2814 Male, age 76, right hemisphere 16.6
2695 Female, age 67, right hemisphere 13.5
Basal amygdala
nTPM: 39.9
2609 Male, age 75, right hemisphere 65.3
2243 Female, age 91, right hemisphere 49.5
2110 Male, age 80, left hemisphere 47.7
2685 Female, age 94, left hemisphere 30.6
1955 Male, age 76, both hemispheres 24.7
2827 Female, age 67, right hemisphere 21.8
Central amygdala
nTPM: 30.4
2239 Male, age 80, left hemisphere 41.5
2515 Male, age 75, right hemisphere 38.9
2826 Female, age 94, left hemisphere 32.6
2701 Female, age 91, right hemisphere 24.4
1905 Male, age 76, both hemispheres 14.4
Corticomedial amygdala
nTPM: 44.1
2829 Male, age 80, left hemisphere 70.1
2428 Male, age 75, right hemisphere 59.4
2242 Female, age 91, right hemisphere 44.7
2429 Female, age 94, left hemisphere 40.2
2240 Male, age 76, both hemispheres 25.3
2535 Female, age 67, right hemisphere 24.8
Lateral amygdala
nTPM: 29.2
2516 Male, age 75, right hemisphere 44.9
2256 Male, age 80, left hemisphere 37.7
2255 Female, age 91, right hemisphere 28.9
2534 Female, age 94, left hemisphere 28.3
1883 Male, age 76, both hemispheres 18.6
2830 Female, age 67, right hemisphere 17.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 106.3
Samples: 181

Max nTPM: 348.5
Min nTPM: 22.2
Std nTPM: 55.5
Median nTPM: 91.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 348.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 297.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 285.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 281.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 269.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 251.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 241.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 226.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 210.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 206.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 201.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 201.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 198.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 193.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 192.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 189.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 184.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 178.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 177.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 176.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 175.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 174.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 173.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 171.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 168.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 159.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 157.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 155.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 154.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 153.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 151.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 148.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 148.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 146.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 144.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 143.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 142.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 141.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 141.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 140.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 139.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 134.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 133.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 133.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 132.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 132.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 131.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 127.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 127.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 126.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 124.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 124.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 121.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 121.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 120.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 119.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 118.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 118.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 116.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 116.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 116.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 114.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 114.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 113.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 111.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 108.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 107.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 107.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 104.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 103.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 99.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 98.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 98.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 97.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 97.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 96.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 96.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 96.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 96.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 96.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 96.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 95.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 95.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 95.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 95.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 94.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 93.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 93.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 92.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 92.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 91.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 91.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 90.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 90.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 90.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 89.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 88.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 88.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 88.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 87.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 87.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 87.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 86.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 85.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 85.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 85.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 85.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 84.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 84.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 83.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 83.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 81.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 80.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 80.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 79.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 78.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 78.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 77.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 77.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 77.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 77.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 76.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 76.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 76.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 76.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 75.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 74.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 72.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 72.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 72.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 71.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 71.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 70.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 70.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 69.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 69.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 68.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 67.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 67.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 66.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 65.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 65.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 64.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 63.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 62.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 62.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 62.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 62.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 62.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 59.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 59.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 59.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 58.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 58.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 58.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 58.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 57.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 57.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 57.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 57.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 56.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 55.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 53.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 53.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 52.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 51.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 50.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 46.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 44.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 39.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 39.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 38.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 35.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 34.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 33.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 32.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 31.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 30.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 28.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 22.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

239.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 239.7
FF:10151-102I7 76 years, female 239.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.6
Pig sample Sample description nTPM
Amygdala
nTPM: 41.6
Samples: 4

Max nTPM: 58.1
Min nTPM: 26.4
Sample A Female 58.1
Sample B Female 26.4
Sample C Male 46.5
Sample D Male 35.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 52.5
Samples: 4

Max nTPM: 55.2
Min nTPM: 49.0
Sample A Male 55.1
Sample B Male 50.6
Sample C Female 49.0
Sample D Female 55.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
72004440 Antisense, RP_050915_02_G09, Mouse strain C57BL/6J (56 days, male) 0.3
74357570 Antisense, RP_050915_02_G09, Mouse strain C57BL/6J (56 days, male) 0.0

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