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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:40.9 nTPM
HPA Brain:130.0 nTPM
GTEx:40.9 nTPM
FANTOM5:105.4 Scaled Tags Per Million
Pig:57.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 116.1
1981 Female, age 72, midline 127.4
2048 Male, age 55, midline 124.5
2816 Male, age 47, midline 113.2
2194 Female, age 79, both hemispheres 113.1
2565 Male, age 75, midline 102.3
Cervical spinal cord, dorsal horn
nTPM: 116.0
2296 Male, age 66, both hemispheres 159.0
2173 Female, age 72, unknown 144.5
2069 Male, age 47, both hemispheres 105.9
1877 Male, age 55, unknown 99.8
2721 Male, age 90, both hemispheres 95.7
2297 Male, age 75, both hemispheres 91.2
Cervical spinal cord, ventral horn
nTPM: 130.0
2098 Female, age 72, unknown 143.2
2295 Male, age 66, both hemispheres 136.3
2809 Male, age 90, both hemispheres 128.3
2820 Female, age 79, both hemispheres 128.0
2480 Male, age 75, both hemispheres 125.2
2068 Male, age 55, unknown 119.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 40.9
Samples: 204

Max nTPM: 85.4
Min nTPM: 12.9
Std nTPM: 12.0
Median nTPM: 40.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 85.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 72.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 71.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 68.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 66.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 66.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 65.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 64.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 63.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 62.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 60.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 60.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 59.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 59.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 59.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 59.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 59.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 59.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 59.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 58.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 58.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 56.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 56.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 56.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 56.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 55.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 54.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 54.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 53.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 53.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 53.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 53.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 53.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 52.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 52.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 51.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 51.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 50.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 50.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 50.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 50.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 50.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 49.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 49.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 49.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 48.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 48.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 48.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 48.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 48.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 48.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 48.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 47.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 47.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 47.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 47.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 46.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 46.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 46.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 46.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 46.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 46.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 45.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 45.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 45.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 45.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 45.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 45.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 44.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 44.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 44.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 44.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 44.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 43.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 43.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 43.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 43.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 43.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 42.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 42.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 42.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 42.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 42.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 42.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 42.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 42.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 42.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 42.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 42.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 41.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 41.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 41.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 41.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 41.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 41.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 41.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 41.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 40.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 40.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 40.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 40.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 40.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 40.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 39.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 39.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 39.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 39.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 39.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 39.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 39.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 39.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 39.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 38.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 38.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 38.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 38.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 38.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 38.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 38.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 37.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 37.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 37.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 37.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 37.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 37.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 37.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 36.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 36.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 36.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 36.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 36.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 36.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 36.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 35.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 35.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 35.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 35.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 35.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 34.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 34.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 34.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 34.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 34.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 34.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 34.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 33.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 33.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 33.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 33.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 33.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 33.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 33.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 33.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 32.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 32.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 32.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 32.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 32.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 32.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 31.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 31.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 31.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 31.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 30.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 30.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 29.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 29.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 29.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 29.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 29.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 29.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 28.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 28.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 28.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 28.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 28.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 28.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 27.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 27.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 27.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 27.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 27.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 27.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 26.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 26.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 26.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 26.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 25.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 24.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 24.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 24.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 23.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 23.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 22.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 21.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 20.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 19.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 19.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 18.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 17.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 17.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 15.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 14.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 12.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 105.4
FF:10159-103A6 76 years, female 121.1
FF:10181-103D1 60 years, female 89.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 46.4
Samples: 4

Max nTPM: 50.5
Min nTPM: 43.1
Sample A Female 43.1
Sample B Female 48.6
Sample C Male 43.4
Sample D Male 50.5
Ventral spinal cord
nTPM: 57.7
Samples: 4

Max nTPM: 60.8
Min nTPM: 52.7
Sample A Female 60.8
Sample B Female 60.4
Sample C Male 52.7
Sample D Male 56.9

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