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RNF8
HPA
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  • SUMMARY

  • TISSUE

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  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RNF8
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
ISOLATED
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RNF8
Synonyms KIAA0646
Gene descriptioni

Full gene name according to HGNC.

Ring finger protein 8
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Enzymes
Essential proteins
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Glandular & Luminal cells - Estrogen-regulated epithelial secretion (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Low cell type specificity
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Basic cellular processes (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Nucleoplasm In addition localized to the Cytosol
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 6
Cytoband p21.2
Chromosome location (bp) 37353979 - 37394734
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000112130 (version 109)
Entrez gene 9025
HGNC HGNC:10071
UniProt O76064
GeneCards RNF8
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Non-specific - Basic cellular processes

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
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On
PAE plot
Number of interactions: 3
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
MDC1777300
NBN10125610
PSMB14384634320
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 42 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
AMOTL23381820
C2CD6044000
CALCOCO1514950
CCDC5006805
CEP445401300
CLK215454020
CLK314344550
DDIT4L1169100
DNM29272180
DNTTIP2041214
FAM118B07008
FAM9B3118401
FSD2173300
GPRASP2324501
KANK25153730
KRTAP10-83325300
KRTAP9-21123200
KRTAP9-8072000
LMO44851403
MAD1L15381206
MAPK11934123512
MDC1777300
NBN10125610
PCYT1A112303
PGRMC21255202413
PICK1102763609
PNMA293014023
PPCDC010000
PSMB14384634320
RBFOX28192300
SCN3B3944027
SEPTIN3714860
STX118801108
TMEM79032108
TNIP122687700
TOMM20L04000
UBE2D2334113004
VCP5756348435
WASHC3154518722
WASL15232782
ZNF346391650
ZNF496211400
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 46
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ALB0111015
BLM121565100
CFLAR332800
CHD4133188170
CHEK215195010
DGCR8241300
FUS142815060
H2AC203050035
H2AX2230128039
H2BC3005200
H3-3B4261015
HERC29669020
JMJD1C11810
KMT5A4161300
MAD2L1111239311
MAGED17802520
MDC1777300
MDN10110010
MYC6690126920
NBN10125610
NONO81165131
OLA1011010
PCNA34371501014
PSMB14384634320
RECQL45193023
RPSA3211954079
RXRA10135000
SERBP1166151350
SUMO2141810700
SUMO34141700
TP53BP111706820
TPM1582200
TRIM296132600
TWIST15222500
UBC355946340
UBE2D1344012300
UBE2D3232612100
UBE2E1784706
UBE2E29173302
UBE2E314253602
UBE2N17266620
UBE2V212900
WRAP537613026
XRN2593810
YBX121311221236
ZBTB1015860
Show allShow less
RNF8 has no defined protein interactions in OpenCell.
RNF8 has no defined protein interactions in BioPlex.
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene RNF8 is associated with 1 reactions in 1 different subsystems, and present in the compartments: Cytosol. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Isolated Cytosol, Mitochondria, Peroxisome, Endoplasmic reticulum, Extracellular, Nucleus, Golgi apparatus 524 320 1
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RNF8-202 O76064
Enzymes
Metabolic proteins
Predicted intracellular proteins
Mapped to neXtProt
Essential proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
485 aa
55.5 kDa
No 0
RNF8-204 O76064
Enzymes
Metabolic proteins
Predicted intracellular proteins
Mapped to neXtProt
Essential proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
448 aa
50.8 kDa
No 0
RNF8-206 C9J858
Metabolic proteins
Predicted intracellular proteins
Essential proteins
Protein evidence (Ezkurdia et al 2014)
205 aa
23.1 kDa
No 0
RNF8-208 H7C4L7
Metabolic proteins
Predicted intracellular proteins
Essential proteins
Protein evidence (Ezkurdia et al 2014)
208 aa
23.7 kDa
No 0

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