MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:45.7 nTPM
GTEx:16.1 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:70.5 nTPM
Mouse:60.2 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.7
2019 Male, age 18, unknown 45.7
1827 Male, age 72, unknown 45.5
2586 Male, age 75, left hemisphere 41.4
2666 Male, age 74, left hemisphere 40.5
2828 Female, age 72, unknown 38.0
2219 Male, age 76, both hemispheres 37.7
2411 Female, age 72, unknown 35.3
1870 Female, age 42, unknown 31.6
1833 Male, age 53, unknown 31.2
1830 Male, age 51, unknown 30.2
Dorsal raphe nucleus
nTPM: 33.0
2298 Female, age 72, unknown 38.4
1828 Male, age 53, unknown 36.0
2047 Male, age 72, unknown 32.5
2750 Male, age 76, both hemispheres 31.0
2016 Female, age 72, unknown 26.9
Inferior colliculus
nTPM: 37.7
2097 Female, age 72, unknown 42.0
1890 Male, age 53, unknown 36.5
2849 Male, age 72, unknown 36.2
1848 Female, age 42, unknown 36.0
Median raphe nucleus
nTPM: 36.8
2220 Male, age 76, midline 36.8
Periaquaductal grey, anterior
nTPM: 40.4
1795 Male, age 51, unknown 42.0
1947 Male, age 18, unknown 40.5
2502 Female, age 75, unknown 38.6
Periaquaductal grey, dorsal
nTPM: 30.7
1840 Male, age 53, unknown 33.1
2850 Male, age 76, both hemispheres 30.8
1831 Male, age 72, unknown 30.1
2464 Female, age 72, unknown 28.7
Periaquaductal grey, lateral
nTPM: 30.3
2053 Male, age 18, unknown 31.4
2140 Male, age 76, both hemispheres 30.2
2272 Male, age 74, both hemispheres 29.1
Pretectal area
nTPM: 44.8
1816 Male, age 51, unknown 62.7
2007 Male, age 72, unknown 59.8
1817 Female, age 42, unknown 59.2
1944 Female, age 72, unknown 55.7
1815 Male, age 53, unknown 48.0
2667 Female, age 75, unknown 45.1
2407 Male, age 75, both hemispheres 36.4
2224 Female, age 72, unknown 33.6
2825 Male, age 18, unknown 32.5
2273 Male, age 74, both hemispheres 30.5
2316 Male, age 76, right hemisphere 29.6
Red nucleus
nTPM: 33.7
2785 Male, age 18, unknown 43.1
2584 Male, age 75, left hemisphere 38.2
2725 Female, age 75, unknown 37.8
1821 Female, age 72, unknown 37.6
2588 Male, age 74, left hemisphere 34.0
2503 Female, age 72, unknown 32.5
2769 Male, age 72, unknown 31.7
1954 Female, age 42, unknown 30.4
1865 Male, age 51, unknown 30.2
1904 Male, age 53, unknown 30.0
2227 Male, age 72, unknown 29.9
2823 Male, age 76, right hemisphere 29.1
Substantia nigra
nTPM: 45.7
1916 Female, age 42, unknown 64.5
1941 Male, age 53, unknown 54.7
1889 Female, age 72, unknown 52.1
2665 Male, age 74, both hemispheres 51.6
1851 Male, age 51, unknown 46.4
2241 Male, age 72, unknown 43.5
2583 Male, age 75, right hemisphere 38.4
2590 Female, age 75, unknown 36.9
2409 Female, age 72, unknown 34.7
2699 Male, age 18, unknown 34.7
Superior colliculus
nTPM: 37.8
2087 Female, age 72, unknown 50.4
1796 Male, age 53, unknown 42.5
1895 Male, age 76, right hemisphere 40.7
2668 Female, age 75, unknown 40.3
2261 Male, age 18, unknown 39.1
1839 Male, age 51, unknown 35.9
2587 Male, age 74, left hemisphere 35.9
2664 Male, age 75, both hemispheres 34.6
1913 Female, age 42, unknown 30.6
1995 Male, age 72, unknown 28.5
Ventral tegmental area
nTPM: 39.0
2410 Female, age 72, unknown 51.6
2218 Male, age 76, both hemispheres 45.1
1915 Female, age 42, unknown 44.7
1942 Male, age 51, unknown 34.6
2223 Female, age 72, unknown 29.9
2021 Male, age 53, unknown 28.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 183

Max nTPM: 60.8
Min nTPM: 6.0
Std nTPM: 8.2
Median nTPM: 13.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 60.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 53.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 38.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 37.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 36.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 36.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 36.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 34.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 33.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 33.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 33.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 70.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.3
Samples: 4

Max nTPM: 75.1
Min nTPM: 42.9
Sample A Female 75.1
Sample B Female 47.1
Sample C Male 71.9
Sample D Male 42.9
Midbrain
nTPM: 64.9
Samples: 4

Max nTPM: 83.9
Min nTPM: 45.6
Sample A Female 60.3
Sample B Female 45.6
Sample C Male 83.9
Sample D Male 69.7
Periaqueductal gray
nTPM: 49.3
Samples: 3

Max nTPM: 58.1
Min nTPM: 43.2
Sample B Female 46.6
Sample C Male 58.1
Sample D Male 43.2
Superior colliculi
nTPM: 70.5
Samples: 4

Max nTPM: 87.5
Min nTPM: 48.1
Sample A Female 76.4
Sample B Female 48.1
Sample C Male 87.5
Sample D Male 70.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 60.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 64.8
Min nTPM: 56.7
Sample A Male 57.6
Sample B Male 56.7
Sample C Female 64.8
Sample D Female 61.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
74059351 Antisense, RP_051214_02_C05, Mouse strain C57BL/6J (56 days, male) 4.0
74047908 Antisense, RP_051214_02_C05, Mouse strain C57BL/6J (56 days, male) 2.5

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