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  • GNPDA1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:18.3 nTPM
HPA Brain:23.6 nTPM
GTEx:18.3 nTPM
FANTOM5:15.3 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:18.9 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.6
Sample id Sample description nTPM
Amygdala
nTPM: 23.6
2695 Female, age 67, right hemisphere 25.3
2514 Male, age 75, right hemisphere 24.9
1987 Female, age 91, left hemisphere 23.4
2814 Male, age 76, right hemisphere 22.4
2517 Female, age 94, left hemisphere 22.0
Basal amygdala
nTPM: 21.5
2609 Male, age 75, right hemisphere 24.8
2110 Male, age 80, left hemisphere 23.6
2243 Female, age 91, right hemisphere 22.5
2685 Female, age 94, left hemisphere 21.9
1955 Male, age 76, both hemispheres 20.4
2827 Female, age 67, right hemisphere 16.0
Central amygdala
nTPM: 21.5
2515 Male, age 75, right hemisphere 23.6
2701 Female, age 91, right hemisphere 22.4
2239 Male, age 80, left hemisphere 21.3
2826 Female, age 94, left hemisphere 20.9
1905 Male, age 76, both hemispheres 19.2
Corticomedial amygdala
nTPM: 21.7
2428 Male, age 75, right hemisphere 25.0
2829 Male, age 80, left hemisphere 24.2
2240 Male, age 76, both hemispheres 21.5
2242 Female, age 91, right hemisphere 21.2
2429 Female, age 94, left hemisphere 20.9
2535 Female, age 67, right hemisphere 17.1
Lateral amygdala
nTPM: 20.9
2516 Male, age 75, right hemisphere 23.1
2534 Female, age 94, left hemisphere 21.6
1883 Male, age 76, both hemispheres 20.6
2256 Male, age 80, left hemisphere 20.4
2255 Female, age 91, right hemisphere 20.3
2830 Female, age 67, right hemisphere 19.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 18.3
Samples: 181

Max nTPM: 28.5
Min nTPM: 11.3
Std nTPM: 2.9
Median nTPM: 18.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 28.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 26.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 26.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 25.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 25.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 24.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 24.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 23.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 23.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 23.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 23.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 23.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 22.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 22.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 22.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 22.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 22.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 22.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 21.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 21.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 21.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 21.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 21.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 21.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 21.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 21.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 21.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 21.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 21.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 21.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 20.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 20.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 20.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 20.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 20.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 20.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 20.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 20.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 20.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 20.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 20.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 20.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 19.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 19.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 19.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 19.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 19.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 19.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 19.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 19.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 19.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 19.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 19.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 19.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 19.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 19.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 19.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 19.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 19.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 19.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 19.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 19.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 19.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 19.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 19.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 19.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 19.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 19.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 18.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 18.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 18.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 18.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 18.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 18.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 18.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 18.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 18.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 18.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 18.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 18.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 18.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 18.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 18.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 18.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 18.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 18.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 18.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 18.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 18.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 18.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 18.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 18.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 18.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 18.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 17.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 17.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 17.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 17.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 17.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 17.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 17.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 17.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 17.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 17.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 17.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 17.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 17.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 17.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 17.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 17.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 17.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 17.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 17.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 17.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 17.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 17.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 17.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 17.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 16.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 16.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 16.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 16.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 16.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 16.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 16.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 16.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 16.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 16.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 16.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 16.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 16.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 16.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 16.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 16.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 16.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 16.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 16.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 16.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 16.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 16.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 16.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 16.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 15.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 15.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 15.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 15.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 15.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 15.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 15.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 15.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 15.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 15.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 15.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 15.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 15.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 15.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 15.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 15.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 15.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 15.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 15.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 15.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 15.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 14.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 14.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 14.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 14.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 14.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 14.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 14.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 13.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 13.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 13.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 13.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 13.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 13.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 12.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 12.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 11.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 11.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 11.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

15.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 15.3
FF:10151-102I7 76 years, female 15.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.6
Pig sample Sample description nTPM
Amygdala
nTPM: 11.6
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.6
Sample A Female 13.3
Sample B Female 10.6
Sample C Male 11.6
Sample D Male 10.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 18.9
Samples: 4

Max nTPM: 20.2
Min nTPM: 16.7
Sample A Male 19.9
Sample B Male 20.2
Sample C Female 16.7
Sample D Female 18.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
68666547 Antisense, RP_050126_02_E03, Mouse strain C57BL/6J (56 days, male) 0.4
69734488 Antisense, RP_050503_01_A07, Mouse strain C57BL/6J (56 days, male) 0.0

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