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  • SKP1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:680.5 nTPM
HPA Brain:320.0 nTPM
GTEx:680.5 nTPM
FANTOM5:900.0 Scaled Tags Per Million
Pig:0.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 278.2
1981 Female, age 72, midline 351.8
2048 Male, age 55, midline 313.7
2194 Female, age 79, both hemispheres 247.7
2816 Male, age 47, midline 239.8
2565 Male, age 75, midline 237.8
Cervical spinal cord, dorsal horn
nTPM: 320.0
2296 Male, age 66, both hemispheres 392.0
2173 Female, age 72, unknown 364.3
2069 Male, age 47, both hemispheres 362.9
2297 Male, age 75, both hemispheres 280.3
1877 Male, age 55, unknown 261.7
2721 Male, age 90, both hemispheres 258.5
Cervical spinal cord, ventral horn
nTPM: 267.1
2098 Female, age 72, unknown 384.4
2068 Male, age 55, unknown 265.6
2295 Male, age 66, both hemispheres 252.4
2480 Male, age 75, both hemispheres 251.9
2809 Male, age 90, both hemispheres 250.2
2820 Female, age 79, both hemispheres 198.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

680.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 680.5
Samples: 204

Max nTPM: 1177.8
Min nTPM: 369.3
Std nTPM: 130.6
Median nTPM: 675.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1177.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1146.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1016.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1008.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 988.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 958.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 951.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 941.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 934.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 908.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 898.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 896.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 892.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 878.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 870.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 869.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 865.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 858.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 857.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 842.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 841.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 838.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 829.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 828.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 825.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 821.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 819.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 817.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 814.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 808.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 805.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 803.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 798.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 787.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 786.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 784.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 783.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 781.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 776.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 774.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 773.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 772.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 771.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 770.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 769.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 766.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 759.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 757.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 756.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 755.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 754.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 753.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 752.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 752.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 745.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 744.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 743.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 742.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 741.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 739.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 738.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 738.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 736.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 736.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 735.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 735.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 734.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 726.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 723.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 722.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 717.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 716.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 715.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 713.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 713.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 713.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 713.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 713.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 713.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 713.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 713.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 712.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 709.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 706.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 701.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 697.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 697.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 696.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 696.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 695.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 693.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 690.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 688.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 685.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 685.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 685.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 685.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 681.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 680.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 679.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 679.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 676.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 674.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 674.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 673.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 669.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 665.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 662.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 662.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 662.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 660.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 660.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 655.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 655.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 648.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 647.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 646.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 643.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 642.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 642.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 642.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 641.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 639.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 639.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 638.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 637.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 635.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 635.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 634.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 633.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 628.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 628.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 626.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 624.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 623.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 623.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 622.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 621.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 618.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 618.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 617.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 616.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 615.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 615.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 613.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 611.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 611.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 606.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 604.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 603.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 600.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 598.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 592.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 592.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 591.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 590.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 590.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 588.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 583.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 581.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 579.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 577.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 576.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 575.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 572.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 569.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 567.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 564.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 559.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 551.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 545.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 543.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 543.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 542.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 538.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 538.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 537.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 536.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 533.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 526.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 522.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 521.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 521.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 520.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 518.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 512.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 510.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 502.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 500.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 500.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 496.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 495.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 491.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 481.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 479.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 479.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 468.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 464.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 462.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 458.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 436.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 427.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 400.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 369.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

900.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 900.0
FF:10181-103D1 60 years, female 1094.2
FF:10159-103A6 76 years, female 705.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.9
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.3
Sample A Female 1.4
Sample B Female 0.3
Sample C Male 0.8
Sample D Male 1.0
Ventral spinal cord
nTPM: 0.9
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.4
Sample A Female 0.8
Sample B Female 0.4
Sample C Male 1.3
Sample D Male 1.1

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