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  • SKP1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:590.4 nTPM
HPA Brain:251.8 nTPM
GTEx:590.4 nTPM
FANTOM5:617.7 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:494.8 nTPM
Allen mouse:20.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.8
Sample id Sample description nTPM
Amygdala
nTPM: 251.8
2814 Male, age 76, right hemisphere 289.1
2514 Male, age 75, right hemisphere 273.9
1987 Female, age 91, left hemisphere 261.8
2695 Female, age 67, right hemisphere 231.9
2517 Female, age 94, left hemisphere 202.4
Basal amygdala
nTPM: 225.3
2243 Female, age 91, right hemisphere 275.6
1955 Male, age 76, both hemispheres 260.9
2110 Male, age 80, left hemisphere 255.7
2609 Male, age 75, right hemisphere 232.5
2685 Female, age 94, left hemisphere 202.4
2827 Female, age 67, right hemisphere 124.5
Central amygdala
nTPM: 233.6
1905 Male, age 76, both hemispheres 277.0
2239 Male, age 80, left hemisphere 261.5
2701 Female, age 91, right hemisphere 232.6
2515 Male, age 75, right hemisphere 217.9
2826 Female, age 94, left hemisphere 179.0
Corticomedial amygdala
nTPM: 239.4
2240 Male, age 76, both hemispheres 283.0
2242 Female, age 91, right hemisphere 279.7
2829 Male, age 80, left hemisphere 278.1
2429 Female, age 94, left hemisphere 228.7
2428 Male, age 75, right hemisphere 221.8
2535 Female, age 67, right hemisphere 145.2
Lateral amygdala
nTPM: 195.4
1883 Male, age 76, both hemispheres 267.3
2516 Male, age 75, right hemisphere 233.3
2534 Female, age 94, left hemisphere 178.4
2256 Male, age 80, left hemisphere 176.4
2255 Female, age 91, right hemisphere 167.0
2830 Female, age 67, right hemisphere 150.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

590.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 590.4
Samples: 181

Max nTPM: 1476.6
Min nTPM: 225.6
Std nTPM: 181.0
Median nTPM: 562.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1476.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1402.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1257.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1162.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1023.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1015.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 992.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 961.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 928.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 920.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 918.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 884.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 867.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 866.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 848.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 839.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 814.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 787.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 776.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 774.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 769.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 760.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 746.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 745.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 743.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 737.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 731.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 730.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 725.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 712.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 706.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 706.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 703.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 697.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 688.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 687.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 680.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 676.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 675.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 672.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 671.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 669.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 664.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 656.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 648.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 647.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 645.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 642.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 641.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 640.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 640.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 640.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 636.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 635.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 635.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 634.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 628.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 628.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 623.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 622.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 622.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 621.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 619.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 619.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 616.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 615.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 611.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 611.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 611.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 608.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 607.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 605.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 604.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 602.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 599.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 594.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 593.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 592.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 591.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 589.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 587.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 578.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 578.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 577.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 572.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 571.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 571.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 567.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 567.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 566.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 562.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 553.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 553.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 552.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 550.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 547.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 546.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 544.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 543.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 540.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 536.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 532.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 531.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 531.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 530.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 530.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 528.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 528.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 523.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 523.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 523.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 515.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 514.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 513.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 512.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 511.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 508.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 504.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 503.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 503.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 502.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 498.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 496.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 492.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 490.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 486.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 484.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 484.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 483.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 483.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 480.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 477.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 474.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 473.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 471.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 470.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 470.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 468.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 466.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 464.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 462.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 462.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 462.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 458.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 458.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 457.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 456.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 456.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 453.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 447.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 446.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 446.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 443.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 441.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 439.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 438.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 436.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 435.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 434.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 426.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 416.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 413.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 411.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 410.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 404.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 403.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 401.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 400.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 391.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 386.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 384.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 381.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 376.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 363.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 358.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 358.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 357.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 343.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 331.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 317.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 225.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

617.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 617.7
FF:10151-102I7 76 years, female 617.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.1
Pig sample Sample description nTPM
Amygdala
nTPM: 3.1
Samples: 4

Max nTPM: 4.6
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 2.0
Sample C Male 4.5
Sample D Male 4.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

494.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 494.9
Samples: 4

Max nTPM: 519.4
Min nTPM: 483.2
Sample A Male 484.4
Sample B Male 519.4
Sample C Female 483.2
Sample D Female 492.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.8
73573175 Antisense, RP_051121_03_D09, Mouse strain C57BL/6J (56 days, male) 20.8

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