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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:9.4 nTPM
HPA Brain:17.2 nTPM
GTEx:9.4 nTPM
FANTOM5:32.8 Scaled Tags Per Million
Pig:22.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 13.5
2565 Male, age 75, midline 16.3
2048 Male, age 55, midline 14.2
2194 Female, age 79, both hemispheres 13.4
1981 Female, age 72, midline 12.4
2816 Male, age 47, midline 10.9
Cervical spinal cord, dorsal horn
nTPM: 10.3
2173 Female, age 72, unknown 12.7
2721 Male, age 90, both hemispheres 11.6
1877 Male, age 55, unknown 11.4
2297 Male, age 75, both hemispheres 9.3
2069 Male, age 47, both hemispheres 8.9
2296 Male, age 66, both hemispheres 7.8
Cervical spinal cord, ventral horn
nTPM: 17.2
2068 Male, age 55, unknown 19.7
2480 Male, age 75, both hemispheres 19.3
2295 Male, age 66, both hemispheres 17.6
2098 Female, age 72, unknown 15.9
2809 Male, age 90, both hemispheres 15.5
2820 Female, age 79, both hemispheres 15.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 9.4
Samples: 204

Max nTPM: 34.1
Min nTPM: 2.1
Std nTPM: 5.1
Median nTPM: 8.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 34.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 31.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 25.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 21.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 21.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 21.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 21.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 20.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 20.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 20.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 19.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 19.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 19.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 19.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 18.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 18.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 18.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 18.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 17.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 17.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 17.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 16.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 16.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 15.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 15.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 15.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 15.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 15.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 15.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 14.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 13.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 13.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 13.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 13.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 13.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 12.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 12.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 12.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 12.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 12.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 12.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 12.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 11.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 11.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 11.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 11.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 11.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 11.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 11.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 11.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 11.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 11.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 11.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 11.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 10.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 10.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 10.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 10.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 10.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 10.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 10.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 10.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 10.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 10.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 10.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 10.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 10.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 10.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 10.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 10.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 10.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 10.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 10.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 10.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 10.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 9.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 9.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 9.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 9.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 9.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 9.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 9.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 9.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 9.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 9.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 9.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 9.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 9.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 9.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 9.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 8.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 8.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 8.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 8.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 8.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 8.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 8.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 8.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 8.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 8.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 8.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 8.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 8.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 8.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 8.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 8.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 8.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 8.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 8.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 8.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 8.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 7.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 7.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 7.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 7.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 7.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 7.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 7.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 7.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 7.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 7.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 7.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 7.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 7.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 7.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 7.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 7.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 7.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 7.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 7.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 6.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 6.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 6.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 6.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 6.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 6.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 6.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 6.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 6.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 6.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 6.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 6.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 6.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 6.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 6.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 6.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 6.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 5.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 5.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 5.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 5.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 5.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 5.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 5.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 5.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 5.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 5.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 5.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 5.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 5.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 5.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 5.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 5.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 5.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 5.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 5.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 5.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 5.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 4.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 4.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 4.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 4.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 4.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 4.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 4.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 4.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 4.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 4.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 4.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 4.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 4.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 4.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 4.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 4.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 4.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 3.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 3.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 3.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 3.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 3.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 3.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 3.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 3.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 3.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 3.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 3.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 3.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 3.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 2.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 32.8
FF:10159-103A6 76 years, female 33.3
FF:10181-103D1 60 years, female 32.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 23.0
Samples: 4

Max nTPM: 44.1
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 20.2
Sample C Male 44.1
Sample D Male 15.7
Ventral spinal cord
nTPM: 15.1
Samples: 4

Max nTPM: 21.3
Min nTPM: 11.7
Sample A Female 13.5
Sample B Female 14.0
Sample C Male 21.3
Sample D Male 11.7

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