MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:155.5 nTPM
HPA Brain:76.3 nTPM
GTEx:155.5 nTPM
FANTOM5:166.4 Scaled Tags Per Million
Pig:55.9 nTPM
Mouse:62.4 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.0
1870 Female, age 42, unknown 74.7
1833 Male, age 53, unknown 61.7
1830 Male, age 51, unknown 61.4
2828 Female, age 72, unknown 58.2
2411 Female, age 72, unknown 57.5
2019 Male, age 18, unknown 55.7
1827 Male, age 72, unknown 49.5
2666 Male, age 74, left hemisphere 45.4
2586 Male, age 75, left hemisphere 43.5
2219 Male, age 76, both hemispheres 42.0
Dorsal raphe nucleus
nTPM: 76.3
2298 Female, age 72, unknown 83.1
2047 Male, age 72, unknown 80.8
2016 Female, age 72, unknown 77.4
1828 Male, age 53, unknown 70.9
2750 Male, age 76, both hemispheres 69.3
Inferior colliculus
nTPM: 60.7
2097 Female, age 72, unknown 65.6
1848 Female, age 42, unknown 63.8
1890 Male, age 53, unknown 60.5
2849 Male, age 72, unknown 52.8
Median raphe nucleus
nTPM: 65.1
2220 Male, age 76, midline 65.1
Periaquaductal grey, anterior
nTPM: 54.8
2502 Female, age 75, unknown 56.8
1947 Male, age 18, unknown 55.4
1795 Male, age 51, unknown 52.0
Periaquaductal grey, dorsal
nTPM: 62.3
2850 Male, age 76, both hemispheres 73.5
1840 Male, age 53, unknown 63.7
2464 Female, age 72, unknown 57.3
1831 Male, age 72, unknown 54.6
Periaquaductal grey, lateral
nTPM: 68.3
2140 Male, age 76, both hemispheres 78.6
2272 Male, age 74, both hemispheres 64.5
2053 Male, age 18, unknown 61.9
Pretectal area
nTPM: 56.0
2273 Male, age 74, both hemispheres 70.2
2224 Female, age 72, unknown 66.1
2316 Male, age 76, right hemisphere 63.9
2667 Female, age 75, unknown 62.0
1817 Female, age 42, unknown 58.2
2825 Male, age 18, unknown 57.5
1815 Male, age 53, unknown 49.5
2407 Male, age 75, both hemispheres 49.2
2007 Male, age 72, unknown 48.5
1944 Female, age 72, unknown 47.8
1816 Male, age 51, unknown 43.0
Red nucleus
nTPM: 68.4
1954 Female, age 42, unknown 89.0
1821 Female, age 72, unknown 86.1
1865 Male, age 51, unknown 76.2
1904 Male, age 53, unknown 73.7
2503 Female, age 72, unknown 71.2
2769 Male, age 72, unknown 70.9
2227 Male, age 72, unknown 70.1
2725 Female, age 75, unknown 67.9
2823 Male, age 76, right hemisphere 67.0
2785 Male, age 18, unknown 64.1
2588 Male, age 74, left hemisphere 48.1
2584 Male, age 75, left hemisphere 37.0
Substantia nigra
nTPM: 71.9
2699 Male, age 18, unknown 90.2
1916 Female, age 42, unknown 85.1
2409 Female, age 72, unknown 84.0
1851 Male, age 51, unknown 79.8
2241 Male, age 72, unknown 77.9
2665 Male, age 74, both hemispheres 64.5
2590 Female, age 75, unknown 63.3
1941 Male, age 53, unknown 61.1
1889 Female, age 72, unknown 59.0
2583 Male, age 75, right hemisphere 54.0
Superior colliculus
nTPM: 54.2
1995 Male, age 72, unknown 66.6
1913 Female, age 42, unknown 64.5
2587 Male, age 74, left hemisphere 63.7
1839 Male, age 51, unknown 55.9
1895 Male, age 76, right hemisphere 52.2
2087 Female, age 72, unknown 52.2
1796 Male, age 53, unknown 51.1
2668 Female, age 75, unknown 50.8
2261 Male, age 18, unknown 44.4
2664 Male, age 75, both hemispheres 40.1
Ventral tegmental area
nTPM: 67.8
2021 Male, age 53, unknown 76.1
2410 Female, age 72, unknown 72.6
2223 Female, age 72, unknown 69.3
1915 Female, age 42, unknown 68.9
1942 Male, age 51, unknown 60.0
2218 Male, age 76, both hemispheres 59.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 155.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 155.5
Samples: 183

Max nTPM: 429.6
Min nTPM: 45.3
Std nTPM: 51.8
Median nTPM: 147.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 429.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 374.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 321.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 290.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 289.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 286.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 281.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 250.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 240.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 240.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 233.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 166.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 166.4
FF:10158-103A5 76 years, female 166.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 55.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.1
Samples: 4

Max nTPM: 60.7
Min nTPM: 39.3
Sample A Female 53.3
Sample B Female 60.7
Sample C Male 39.3
Sample D Male 46.9
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 70.9
Min nTPM: 26.7
Sample A Female 70.9
Sample B Female 49.5
Sample C Male 26.7
Sample D Male 27.4
Periaqueductal gray
nTPM: 48.2
Samples: 3

Max nTPM: 50.2
Min nTPM: 46.6
Sample B Female 46.6
Sample C Male 50.2
Sample D Male 47.7
Superior colliculi
nTPM: 55.9
Samples: 4

Max nTPM: 102.8
Min nTPM: 30.8
Sample A Female 54.5
Sample B Female 102.8
Sample C Male 30.8
Sample D Male 35.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.5
Samples: 4

Max nTPM: 66.3
Min nTPM: 60.4
Sample A Male 61.2
Sample B Male 60.4
Sample C Female 61.9
Sample D Female 66.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68196930 Antisense, RP_041116_01_F09, Mouse strain C57BL/6J (56 days, male) 0.1

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