HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.8 nTPM
HPA Brain:48.9 nTPM
GTEx:97.8 nTPM
FANTOM5:103.1 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:68.7 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 48.9
Sample id Sample description nTPM
Hippocampus
nTPM: 48.9
2529 Female, age 94, left hemisphere 55.0
1911 Female, age 85, right hemisphere 52.2
1855 Male, age 76, left hemisphere 50.4
1898 Male, age 80, left hemisphere 49.1
2148 Female, age 91, left hemisphere 45.6
2621 Female, age 67, right hemisphere 40.9
Dentate gyrus
nTPM: 41.8
2010 Male, age 76, both hemispheres 55.1
2528 Male, age 74, both hemispheres 46.2
2246 Female, age 85, both hemispheres 42.7
2530 Female, age 94, left hemisphere 37.6
1927 Female, age 91, both hemispheres 37.5
2531 Female, age 67, both hemispheres 31.8
Entorhinal gyrus
nTPM: 37.9
2117 Female, age 91, right hemisphere 58.7
1787 Male, age 76, left hemisphere 39.9
1938 Female, age 85, left hemisphere 39.5
2764 Male, age 80, right hemisphere 35.2
2686 Male, age 75, right hemisphere 31.3
2613 Female, age 94, left hemisphere 22.8
Hippocampus, CA1
nTPM: 45.0
2527 Male, age 74, both hemispheres 50.3
2045 Male, age 76, both hemispheres 47.5
1873 Female, age 85, both hemispheres 45.6
2082 Female, age 91, right hemisphere 42.9
2749 Male, age 80, left hemisphere 38.7
Hippocampus, CA2
nTPM: 46.1
2249 Male, age 74, both hemispheres 59.5
1940 Female, age 85, left hemisphere 52.3
2113 Female, age 91, right hemisphere 46.1
1963 Male, age 80, left hemisphere 43.9
1892 Male, age 76, both hemispheres 37.9
2437 Female, age 94, left hemisphere 36.9
Hippocampus, CA3
nTPM: 45.4
2436 Male, age 74, both hemispheres 69.1
1867 Male, age 76, both hemispheres 49.5
1891 Female, age 85, both hemispheres 48.5
2137 Male, age 80, left hemisphere 39.8
2620 Female, age 94, left hemisphere 34.5
2861 Female, age 67, both hemispheres 30.9
Parahippocampal cortex
nTPM: 40.7
2018 Male, age 76, both hemispheres 60.8
2250 Female, age 67, right hemisphere 41.8
2532 Female, age 72, left hemisphere 41.2
2692 Male, age 74, both hemispheres 40.8
1990 Female, age 91, right hemisphere 40.7
2245 Female, age 91, both hemispheres 40.0
1850 Male, age 80, both hemispheres 38.5
1933 Female, age 85, both hemispheres 37.1
2693 Female, age 94, both hemispheres 36.0
2622 Female, age 67, right hemisphere 30.6
Perirhinal gyrus
nTPM: 36.9
1847 Female, age 91, left hemisphere 39.7
2521 Female, age 94, right hemisphere 38.1
1841 Female, age 85, right hemisphere 37.4
1794 Male, age 80, right hemisphere 36.2
2848 Male, age 76, right hemisphere 33.2
Subiculum
nTPM: 46.4
2042 Male, age 76, both hemispheres 59.1
2729 Female, age 91, right hemisphere 48.4
2619 Male, age 74, both hemispheres 47.4
1901 Male, age 80, both hemispheres 43.9
1977 Female, age 85, both hemispheres 42.0
2438 Female, age 94, left hemisphere 37.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 97.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 97.8
Samples: 255

Max nTPM: 187.5
Min nTPM: 46.4
Std nTPM: 23.8
Median nTPM: 96.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 187.5
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 174.9
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 159.8
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 155.1
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 151.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 149.3
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 147.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 147.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 147.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 145.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 144.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 103.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 103.1
FF:10169-103B7 60 years, female 103.8
FF:10153-102I9 76 years, female 102.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 26.8
Pig sample Sample description nTPM
Subiculum
nTPM: 25.9
Samples: 4

Max nTPM: 31.0
Min nTPM: 22.7
Sample A Female 26.3
Sample B Female 23.7
Sample C Male 22.7
Sample D Male 31.0
Dorsal hippocampus
nTPM: 26.8
Samples: 4

Max nTPM: 31.9
Min nTPM: 19.7
Sample A Female 31.9
Sample B Female 23.9
Sample C Male 31.6
Sample D Male 19.7
Entorhinal cortex
nTPM: 22.5
Samples: 4

Max nTPM: 25.7
Min nTPM: 17.6
Sample A Female 22.1
Sample B Female 25.7
Sample C Male 24.6
Sample D Male 17.6
Ventral hippocampus
nTPM: 24.4
Samples: 4

Max nTPM: 27.1
Min nTPM: 21.6
Sample A Female 24.1
Sample B Female 21.6
Sample C Male 27.1
Sample D Male 24.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 68.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 54.1
Samples: 4

Max nTPM: 62.4
Min nTPM: 47.0
Sample A Male 52.5
Sample B Male 54.6
Sample C Female 62.4
Sample D Female 47.0
Hippocampal formation
nTPM: 68.7
Samples: 4

Max nTPM: 85.7
Min nTPM: 53.6
Sample A Male 58.8
Sample B Male 53.6
Sample C Female 76.7
Sample D Female 85.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
68196930 Antisense, RP_041116_01_F09, Mouse strain C57BL/6J (56 days, male) 0.1

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