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  • HES1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:15.8 nTPM
HPA Brain:17.5 nTPM
GTEx:15.8 nTPM
FANTOM5:52.8 Scaled Tags Per Million
Pig:22.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 13.1
2565 Male, age 75, midline 17.0
2048 Male, age 55, midline 15.2
1981 Female, age 72, midline 13.4
2194 Female, age 79, both hemispheres 10.1
2816 Male, age 47, midline 9.8
Cervical spinal cord, dorsal horn
nTPM: 13.9
2297 Male, age 75, both hemispheres 17.0
2069 Male, age 47, both hemispheres 16.8
1877 Male, age 55, unknown 16.3
2721 Male, age 90, both hemispheres 12.6
2296 Male, age 66, both hemispheres 11.2
2173 Female, age 72, unknown 9.6
Cervical spinal cord, ventral horn
nTPM: 17.5
2098 Female, age 72, unknown 30.1
2809 Male, age 90, both hemispheres 20.4
2295 Male, age 66, both hemispheres 17.3
2480 Male, age 75, both hemispheres 16.5
2068 Male, age 55, unknown 11.4
2820 Female, age 79, both hemispheres 9.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 15.8
Samples: 204

Max nTPM: 59.9
Min nTPM: 2.8
Std nTPM: 9.3
Median nTPM: 13.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 59.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 53.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 48.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 44.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 43.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 42.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 38.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 33.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 33.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 33.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 32.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 30.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 29.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 29.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 29.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 29.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 27.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 27.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 27.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 27.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 26.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 25.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 25.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 25.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 25.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 25.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 24.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 24.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 24.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 24.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 24.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 24.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 23.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 23.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 23.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 23.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 23.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 22.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 22.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 22.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 22.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 22.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 22.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 22.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 22.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 22.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 22.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 21.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 21.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 21.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 21.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 21.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 20.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 20.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 20.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 20.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 19.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 19.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 19.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 19.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 19.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 19.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 19.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 19.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 19.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 18.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 18.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 18.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 18.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 18.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 17.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 17.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 17.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 17.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 17.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 16.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 16.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 16.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 16.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 16.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 16.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 15.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 15.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 15.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 15.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 15.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 15.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 15.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 15.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 15.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 14.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 14.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 14.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 14.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 14.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 14.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 14.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 14.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 13.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 13.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 13.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 13.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 13.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 13.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 13.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 13.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 13.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 13.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 13.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 12.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 12.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 12.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 12.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 12.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 12.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 12.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 12.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 12.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 11.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 11.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 11.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 11.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 11.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 11.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 11.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 11.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 11.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 11.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 10.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 10.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 10.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 10.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 10.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 10.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 10.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 10.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 10.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 10.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 10.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 10.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 10.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 9.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 9.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 9.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 9.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 9.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 9.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 9.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 9.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 9.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 9.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 9.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 9.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 9.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 9.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 9.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 9.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 8.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 8.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 8.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 8.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 8.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 8.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 8.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 8.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 8.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 8.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 8.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 7.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 7.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 7.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 7.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 7.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 7.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 7.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 7.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 7.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 7.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 7.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 6.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 6.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 6.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 6.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 6.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 5.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 5.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 5.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 5.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 5.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 5.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 5.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 5.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 5.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 5.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 4.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 4.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 4.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 4.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 3.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 3.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 3.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 2.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 2.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

52.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 52.8
FF:10181-103D1 60 years, female 59.2
FF:10159-103A6 76 years, female 46.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 22.9
Samples: 4

Max nTPM: 47.0
Min nTPM: 11.0
Sample A Female 11.0
Sample B Female 18.9
Sample C Male 47.0
Sample D Male 14.7
Ventral spinal cord
nTPM: 15.3
Samples: 4

Max nTPM: 26.2
Min nTPM: 8.3
Sample A Female 13.9
Sample B Female 12.6
Sample C Male 26.2
Sample D Male 8.3

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