MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA Brain:164.9 nTPM
GTEx:9.7 nTPM
FANTOM5:146.1 Scaled Tags Per Million
Pig:51.0 nTPM
Mouse:19.0 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 164.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.0
2666 Male, age 74, left hemisphere 177.4
2219 Male, age 76, both hemispheres 175.9
2411 Female, age 72, unknown 170.6
1827 Male, age 72, unknown 157.1
1870 Female, age 42, unknown 149.6
1833 Male, age 53, unknown 146.0
2586 Male, age 75, left hemisphere 141.8
1830 Male, age 51, unknown 126.9
2828 Female, age 72, unknown 126.0
2019 Male, age 18, unknown 108.4
Dorsal raphe nucleus
nTPM: 128.4
2016 Female, age 72, unknown 139.7
1828 Male, age 53, unknown 128.1
2750 Male, age 76, both hemispheres 127.0
2298 Female, age 72, unknown 125.2
2047 Male, age 72, unknown 122.3
Inferior colliculus
nTPM: 164.9
1848 Female, age 42, unknown 180.9
2097 Female, age 72, unknown 166.0
2849 Male, age 72, unknown 161.4
1890 Male, age 53, unknown 151.3
Median raphe nucleus
nTPM: 110.2
2220 Male, age 76, midline 110.2
Periaquaductal grey, anterior
nTPM: 150.8
1947 Male, age 18, unknown 188.6
2502 Female, age 75, unknown 135.2
1795 Male, age 51, unknown 128.5
Periaquaductal grey, dorsal
nTPM: 139.0
2464 Female, age 72, unknown 145.6
1840 Male, age 53, unknown 145.4
1831 Male, age 72, unknown 144.3
2850 Male, age 76, both hemispheres 120.7
Periaquaductal grey, lateral
nTPM: 114.8
2053 Male, age 18, unknown 138.1
2140 Male, age 76, both hemispheres 119.0
2272 Male, age 74, both hemispheres 87.2
Pretectal area
nTPM: 133.2
1816 Male, age 51, unknown 157.3
1815 Male, age 53, unknown 155.7
2007 Male, age 72, unknown 146.3
1944 Female, age 72, unknown 141.0
2316 Male, age 76, right hemisphere 137.6
2667 Female, age 75, unknown 136.3
1817 Female, age 42, unknown 133.6
2825 Male, age 18, unknown 130.6
2224 Female, age 72, unknown 123.7
2407 Male, age 75, both hemispheres 111.2
2273 Male, age 74, both hemispheres 92.2
Red nucleus
nTPM: 136.2
2588 Male, age 74, left hemisphere 167.9
1821 Female, age 72, unknown 163.5
2503 Female, age 72, unknown 159.0
2725 Female, age 75, unknown 139.2
2227 Male, age 72, unknown 136.1
2769 Male, age 72, unknown 131.5
1954 Female, age 42, unknown 127.5
1865 Male, age 51, unknown 126.4
1904 Male, age 53, unknown 126.3
2584 Male, age 75, left hemisphere 123.0
2785 Male, age 18, unknown 117.4
2823 Male, age 76, right hemisphere 116.4
Substantia nigra
nTPM: 157.7
2665 Male, age 74, both hemispheres 183.0
2241 Male, age 72, unknown 179.0
1916 Female, age 42, unknown 175.6
1851 Male, age 51, unknown 169.7
2409 Female, age 72, unknown 159.1
2699 Male, age 18, unknown 157.9
1889 Female, age 72, unknown 151.9
1941 Male, age 53, unknown 144.2
2590 Female, age 75, unknown 130.0
2583 Male, age 75, right hemisphere 126.8
Superior colliculus
nTPM: 143.0
2668 Female, age 75, unknown 175.8
1895 Male, age 76, right hemisphere 170.1
2587 Male, age 74, left hemisphere 159.2
1839 Male, age 51, unknown 154.9
1796 Male, age 53, unknown 152.6
2261 Male, age 18, unknown 141.3
2087 Female, age 72, unknown 128.2
1913 Female, age 42, unknown 123.4
2664 Male, age 75, both hemispheres 115.8
1995 Male, age 72, unknown 108.8
Ventral tegmental area
nTPM: 146.8
2410 Female, age 72, unknown 175.6
1915 Female, age 42, unknown 161.2
1942 Male, age 51, unknown 146.5
2218 Male, age 76, both hemispheres 141.1
2021 Male, age 53, unknown 138.2
2223 Female, age 72, unknown 118.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 183

Max nTPM: 19.2
Min nTPM: 3.7
Std nTPM: 2.5
Median nTPM: 9.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 19.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 18.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 17.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 17.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 16.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 16.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 14.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 14.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 14.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 14.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 146.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 146.1
FF:10158-103A5 76 years, female 146.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 51.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.1
Samples: 4

Max nTPM: 57.6
Min nTPM: 44.7
Sample A Female 57.6
Sample B Female 45.2
Sample C Male 45.0
Sample D Male 44.7
Midbrain
nTPM: 51.1
Samples: 4

Max nTPM: 61.3
Min nTPM: 40.6
Sample A Female 61.3
Sample B Female 59.0
Sample C Male 40.6
Sample D Male 43.3
Periaqueductal gray
nTPM: 46.5
Samples: 3

Max nTPM: 48.9
Min nTPM: 43.0
Sample B Female 48.9
Sample C Male 43.0
Sample D Male 47.5
Superior colliculi
nTPM: 48.6
Samples: 4

Max nTPM: 51.8
Min nTPM: 46.6
Sample A Female 51.8
Sample B Female 47.5
Sample C Male 46.6
Sample D Male 48.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 20.0
Min nTPM: 17.9
Sample A Male 17.9
Sample B Male 19.5
Sample C Female 20.0
Sample D Female 18.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
1983 Antisense, RP_040507_02_D08, Mouse strain C57BL/6J (56 days, male) 0.7
1982 Antisense, RP_040507_02_D08, Mouse strain C57BL/6J (56 days, male) 0.2

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