HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.9 nTPM
HPA Brain:181.6 nTPM
GTEx:33.9 nTPM
FANTOM5:56.3 Scaled Tags Per Million
Pig:39.2 nTPM
Mouse:31.2 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 181.6
Sample id Sample description nTPM
Hippocampus
nTPM: 173.6
2148 Female, age 91, left hemisphere 188.0
1898 Male, age 80, left hemisphere 185.7
1911 Female, age 85, right hemisphere 176.6
2621 Female, age 67, right hemisphere 172.3
2529 Female, age 94, left hemisphere 160.9
1855 Male, age 76, left hemisphere 157.8
Dentate gyrus
nTPM: 181.6
2530 Female, age 94, left hemisphere 246.4
2528 Male, age 74, both hemispheres 217.9
2010 Male, age 76, both hemispheres 166.6
2531 Female, age 67, both hemispheres 159.8
1927 Female, age 91, both hemispheres 157.9
2246 Female, age 85, both hemispheres 141.1
Entorhinal gyrus
nTPM: 173.8
2613 Female, age 94, left hemisphere 226.5
2764 Male, age 80, right hemisphere 181.4
2117 Female, age 91, right hemisphere 173.7
2686 Male, age 75, right hemisphere 161.6
1787 Male, age 76, left hemisphere 153.8
1938 Female, age 85, left hemisphere 145.9
Hippocampus, CA1
nTPM: 156.7
2749 Male, age 80, left hemisphere 192.4
1873 Female, age 85, both hemispheres 181.1
2527 Male, age 74, both hemispheres 175.5
2082 Female, age 91, right hemisphere 129.5
2045 Male, age 76, both hemispheres 105.1
Hippocampus, CA2
nTPM: 166.4
1963 Male, age 80, left hemisphere 192.1
2437 Female, age 94, left hemisphere 181.2
2249 Male, age 74, both hemispheres 171.6
1940 Female, age 85, left hemisphere 165.2
1892 Male, age 76, both hemispheres 148.3
2113 Female, age 91, right hemisphere 139.9
Hippocampus, CA3
nTPM: 159.1
2861 Female, age 67, both hemispheres 231.7
2620 Female, age 94, left hemisphere 172.1
1891 Female, age 85, both hemispheres 153.5
2137 Male, age 80, left hemisphere 152.2
1867 Male, age 76, both hemispheres 128.7
2436 Male, age 74, both hemispheres 116.4
Parahippocampal cortex
nTPM: 149.8
2622 Female, age 67, right hemisphere 192.3
2692 Male, age 74, both hemispheres 173.6
2245 Female, age 91, both hemispheres 158.4
1990 Female, age 91, right hemisphere 146.2
2693 Female, age 94, both hemispheres 145.0
1933 Female, age 85, both hemispheres 144.5
2532 Female, age 72, left hemisphere 144.4
2250 Female, age 67, right hemisphere 137.7
1850 Male, age 80, both hemispheres 129.2
2018 Male, age 76, both hemispheres 126.9
Perirhinal gyrus
nTPM: 129.2
2521 Female, age 94, right hemisphere 146.8
1794 Male, age 80, right hemisphere 141.9
1847 Female, age 91, left hemisphere 123.7
1841 Female, age 85, right hemisphere 117.7
2848 Male, age 76, right hemisphere 115.8
Subiculum
nTPM: 161.4
2619 Male, age 74, both hemispheres 182.1
2729 Female, age 91, right hemisphere 176.5
2042 Male, age 76, both hemispheres 164.6
1901 Male, age 80, both hemispheres 164.2
1977 Female, age 85, both hemispheres 143.1
2438 Female, age 94, left hemisphere 137.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 33.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.9
Samples: 255

Max nTPM: 55.6
Min nTPM: 12.6
Std nTPM: 8.1
Median nTPM: 34.5
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 55.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 54.0
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 53.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 53.5
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 53.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 50.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 50.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 49.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 49.0
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 48.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 48.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 56.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 56.3
FF:10153-102I9 76 years, female 72.1
FF:10169-103B7 60 years, female 40.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 39.2
Pig sample Sample description nTPM
Subiculum
nTPM: 34.8
Samples: 4

Max nTPM: 42.9
Min nTPM: 29.7
Sample A Female 42.9
Sample B Female 29.7
Sample C Male 36.5
Sample D Male 30.0
Dorsal hippocampus
nTPM: 36.0
Samples: 4

Max nTPM: 40.3
Min nTPM: 31.6
Sample A Female 40.3
Sample B Female 40.3
Sample C Male 31.7
Sample D Male 31.6
Entorhinal cortex
nTPM: 39.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 34.3
Sample A Female 40.8
Sample B Female 34.3
Sample C Male 41.9
Sample D Male 39.8
Ventral hippocampus
nTPM: 37.1
Samples: 4

Max nTPM: 47.0
Min nTPM: 27.4
Sample A Female 29.2
Sample B Female 27.4
Sample C Male 44.9
Sample D Male 47.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 31.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.2
Samples: 4

Max nTPM: 39.2
Min nTPM: 27.1
Sample A Male 30.8
Sample B Male 27.7
Sample C Female 27.1
Sample D Female 39.2
Hippocampal formation
nTPM: 22.2
Samples: 4

Max nTPM: 27.2
Min nTPM: 19.1
Sample A Male 19.1
Sample B Male 27.2
Sample C Female 21.6
Sample D Female 20.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.3
69526731 Antisense, RP_050421_01_E06, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo