MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.3 nTPM
HPA Brain:199.8 nTPM
GTEx:27.3 nTPM
FANTOM5:83.6 Scaled Tags Per Million
Pig:37.6 nTPM
Mouse:26.2 nTPM
Allen mouse:3.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 199.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 185.5
2586 Male, age 75, left hemisphere 312.3
2828 Female, age 72, unknown 227.0
2019 Male, age 18, unknown 204.9
1827 Male, age 72, unknown 187.9
2666 Male, age 74, left hemisphere 169.5
1833 Male, age 53, unknown 153.9
2411 Female, age 72, unknown 152.3
1830 Male, age 51, unknown 151.6
2219 Male, age 76, both hemispheres 148.8
1870 Female, age 42, unknown 146.9
Dorsal raphe nucleus
nTPM: 171.0
2750 Male, age 76, both hemispheres 185.4
2047 Male, age 72, unknown 172.1
2016 Female, age 72, unknown 168.0
2298 Female, age 72, unknown 165.9
1828 Male, age 53, unknown 163.9
Inferior colliculus
nTPM: 148.3
1848 Female, age 42, unknown 161.9
2849 Male, age 72, unknown 148.1
1890 Male, age 53, unknown 143.0
2097 Female, age 72, unknown 140.3
Median raphe nucleus
nTPM: 143.6
2220 Male, age 76, midline 143.6
Periaquaductal grey, anterior
nTPM: 199.8
2502 Female, age 75, unknown 209.7
1795 Male, age 51, unknown 206.3
1947 Male, age 18, unknown 183.3
Periaquaductal grey, dorsal
nTPM: 157.8
1840 Male, age 53, unknown 166.6
1831 Male, age 72, unknown 162.3
2850 Male, age 76, both hemispheres 156.2
2464 Female, age 72, unknown 146.3
Periaquaductal grey, lateral
nTPM: 168.4
2272 Male, age 74, both hemispheres 177.8
2140 Male, age 76, both hemispheres 167.6
2053 Male, age 18, unknown 159.9
Pretectal area
nTPM: 185.4
2007 Male, age 72, unknown 223.5
1816 Male, age 51, unknown 210.1
1944 Female, age 72, unknown 204.3
2273 Male, age 74, both hemispheres 194.7
1817 Female, age 42, unknown 188.3
2407 Male, age 75, both hemispheres 181.9
2316 Male, age 76, right hemisphere 181.7
1815 Male, age 53, unknown 178.8
2667 Female, age 75, unknown 171.2
2825 Male, age 18, unknown 164.5
2224 Female, age 72, unknown 140.8
Red nucleus
nTPM: 177.5
2785 Male, age 18, unknown 217.9
2588 Male, age 74, left hemisphere 203.9
2584 Male, age 75, left hemisphere 200.8
2725 Female, age 75, unknown 191.8
2823 Male, age 76, right hemisphere 186.6
2769 Male, age 72, unknown 182.7
2227 Male, age 72, unknown 170.5
2503 Female, age 72, unknown 161.3
1865 Male, age 51, unknown 161.0
1954 Female, age 42, unknown 160.0
1904 Male, age 53, unknown 157.6
1821 Female, age 72, unknown 136.1
Substantia nigra
nTPM: 160.7
1916 Female, age 42, unknown 200.2
1941 Male, age 53, unknown 196.6
1851 Male, age 51, unknown 177.6
2665 Male, age 74, both hemispheres 167.2
2583 Male, age 75, right hemisphere 166.1
1889 Female, age 72, unknown 164.2
2699 Male, age 18, unknown 139.0
2409 Female, age 72, unknown 137.4
2241 Male, age 72, unknown 134.8
2590 Female, age 75, unknown 123.5
Superior colliculus
nTPM: 189.6
2664 Male, age 75, both hemispheres 263.0
2668 Female, age 75, unknown 225.6
1796 Male, age 53, unknown 199.8
2261 Male, age 18, unknown 194.4
2087 Female, age 72, unknown 193.7
1895 Male, age 76, right hemisphere 171.4
1839 Male, age 51, unknown 169.5
1995 Male, age 72, unknown 167.0
2587 Male, age 74, left hemisphere 159.6
1913 Female, age 42, unknown 152.1
Ventral tegmental area
nTPM: 161.9
1942 Male, age 51, unknown 175.4
2021 Male, age 53, unknown 168.0
1915 Female, age 42, unknown 166.6
2218 Male, age 76, both hemispheres 165.9
2223 Female, age 72, unknown 150.0
2410 Female, age 72, unknown 145.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.3
Samples: 183

Max nTPM: 56.5
Min nTPM: 9.6
Std nTPM: 9.0
Median nTPM: 26.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 56.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 49.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 48.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 47.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 46.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 46.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 45.6
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 45.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 44.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 44.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 43.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.6
FF:10158-103A5 76 years, female 83.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.2
Samples: 4

Max nTPM: 43.8
Min nTPM: 28.0
Sample A Female 35.9
Sample B Female 28.0
Sample C Male 41.2
Sample D Male 43.8
Midbrain
nTPM: 37.6
Samples: 4

Max nTPM: 48.2
Min nTPM: 22.9
Sample A Female 40.9
Sample B Female 22.9
Sample C Male 48.2
Sample D Male 38.2
Periaqueductal gray
nTPM: 29.3
Samples: 3

Max nTPM: 34.9
Min nTPM: 24.5
Sample B Female 24.5
Sample C Male 34.9
Sample D Male 28.5
Superior colliculi
nTPM: 33.9
Samples: 4

Max nTPM: 46.7
Min nTPM: 16.8
Sample A Female 28.7
Sample B Female 16.8
Sample C Male 46.7
Sample D Male 43.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 28.3
Min nTPM: 24.0
Sample A Male 24.0
Sample B Male 27.1
Sample C Female 28.3
Sample D Female 25.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
69526731 Antisense, RP_050421_01_E06, Mouse strain C57BL/6J (56 days, male) 3.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo