MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.2 nTPM
HPA Brain:67.1 nTPM
GTEx:30.2 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:77.5 nTPM
Mouse:94.3 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 67.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.9
1827 Male, age 72, unknown 73.5
2019 Male, age 18, unknown 67.2
2219 Male, age 76, both hemispheres 64.9
2411 Female, age 72, unknown 57.5
2828 Female, age 72, unknown 54.8
2666 Male, age 74, left hemisphere 54.0
1870 Female, age 42, unknown 44.5
2586 Male, age 75, left hemisphere 39.3
1833 Male, age 53, unknown 36.9
1830 Male, age 51, unknown 36.1
Dorsal raphe nucleus
nTPM: 53.2
2298 Female, age 72, unknown 69.9
2047 Male, age 72, unknown 60.3
2750 Male, age 76, both hemispheres 53.3
1828 Male, age 53, unknown 46.3
2016 Female, age 72, unknown 36.1
Inferior colliculus
nTPM: 56.8
2097 Female, age 72, unknown 79.9
1890 Male, age 53, unknown 54.9
1848 Female, age 42, unknown 49.0
2849 Male, age 72, unknown 43.5
Median raphe nucleus
nTPM: 60.1
2220 Male, age 76, midline 60.1
Periaquaductal grey, anterior
nTPM: 62.3
1795 Male, age 51, unknown 68.1
1947 Male, age 18, unknown 60.0
2502 Female, age 75, unknown 58.8
Periaquaductal grey, dorsal
nTPM: 43.5
1831 Male, age 72, unknown 48.0
1840 Male, age 53, unknown 47.6
2464 Female, age 72, unknown 44.5
2850 Male, age 76, both hemispheres 34.1
Periaquaductal grey, lateral
nTPM: 42.3
2272 Male, age 74, both hemispheres 48.6
2053 Male, age 18, unknown 41.6
2140 Male, age 76, both hemispheres 36.6
Pretectal area
nTPM: 67.1
2007 Male, age 72, unknown 105.9
1816 Male, age 51, unknown 105.3
1944 Female, age 72, unknown 91.6
1817 Female, age 42, unknown 87.7
1815 Male, age 53, unknown 66.9
2224 Female, age 72, unknown 56.8
2667 Female, age 75, unknown 48.0
2273 Male, age 74, both hemispheres 46.9
2316 Male, age 76, right hemisphere 44.0
2407 Male, age 75, both hemispheres 43.9
2825 Male, age 18, unknown 41.3
Red nucleus
nTPM: 44.8
2785 Male, age 18, unknown 61.4
2725 Female, age 75, unknown 55.0
2584 Male, age 75, left hemisphere 53.8
1821 Female, age 72, unknown 49.8
2503 Female, age 72, unknown 45.6
2588 Male, age 74, left hemisphere 42.0
2823 Male, age 76, right hemisphere 41.9
1954 Female, age 42, unknown 41.7
2769 Male, age 72, unknown 38.4
2227 Male, age 72, unknown 37.8
1865 Male, age 51, unknown 36.4
1904 Male, age 53, unknown 33.5
Substantia nigra
nTPM: 65.5
1941 Male, age 53, unknown 120.9
1916 Female, age 42, unknown 91.0
1889 Female, age 72, unknown 79.4
1851 Male, age 51, unknown 72.1
2665 Male, age 74, both hemispheres 57.8
2590 Female, age 75, unknown 51.6
2583 Male, age 75, right hemisphere 50.6
2241 Male, age 72, unknown 49.2
2409 Female, age 72, unknown 43.1
2699 Male, age 18, unknown 39.7
Superior colliculus
nTPM: 54.1
2087 Female, age 72, unknown 71.7
2261 Male, age 18, unknown 71.5
2668 Female, age 75, unknown 69.9
1796 Male, age 53, unknown 62.9
1895 Male, age 76, right hemisphere 54.1
2587 Male, age 74, left hemisphere 48.1
1913 Female, age 42, unknown 42.8
1839 Male, age 51, unknown 42.3
2664 Male, age 75, both hemispheres 41.9
1995 Male, age 72, unknown 35.8
Ventral tegmental area
nTPM: 55.8
2410 Female, age 72, unknown 65.1
1915 Female, age 42, unknown 64.2
2218 Male, age 76, both hemispheres 63.7
1942 Male, age 51, unknown 54.6
2223 Female, age 72, unknown 46.3
2021 Male, age 53, unknown 41.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.2
Samples: 183

Max nTPM: 216.1
Min nTPM: 6.4
Std nTPM: 24.7
Median nTPM: 22.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 216.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 138.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 115.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 95.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 94.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 86.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 82.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 77.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 71.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 69.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 68.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.5
FF:10158-103A5 76 years, female 72.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 77.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.2
Samples: 4

Max nTPM: 81.1
Min nTPM: 47.0
Sample A Female 81.1
Sample B Female 55.3
Sample C Male 77.4
Sample D Male 47.0
Midbrain
nTPM: 76.6
Samples: 4

Max nTPM: 112.5
Min nTPM: 37.1
Sample A Female 37.1
Sample B Female 67.6
Sample C Male 112.5
Sample D Male 89.0
Periaqueductal gray
nTPM: 57.9
Samples: 3

Max nTPM: 61.4
Min nTPM: 53.9
Sample B Female 58.3
Sample C Male 61.4
Sample D Male 53.9
Superior colliculi
nTPM: 77.5
Samples: 4

Max nTPM: 100.7
Min nTPM: 59.8
Sample A Female 77.0
Sample B Female 59.8
Sample C Male 100.7
Sample D Male 72.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 94.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.3
Samples: 4

Max nTPM: 105.7
Min nTPM: 87.6
Sample A Male 89.6
Sample B Male 105.7
Sample C Female 94.2
Sample D Female 87.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
501 Antisense, RP_Baylor_102819, Mouse strain C57BL/6J (56 days, male) 0.1
500 Antisense, RP_Baylor_102819, Mouse strain C57BL/6J (56 days, male) 0.0
502 Sense, RPS_Baylor_36995, Mouse strain C57BL/6J (56 days, male) 0.0

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