MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.2 nTPM
HPA Brain:51.2 nTPM
GTEx:43.2 nTPM
FANTOM5:65.6 Scaled Tags Per Million
Pig:44.2 nTPM
Mouse:45.5 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 51.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.7
2219 Male, age 76, both hemispheres 52.5
2411 Female, age 72, unknown 51.3
1870 Female, age 42, unknown 50.6
1827 Male, age 72, unknown 49.9
1833 Male, age 53, unknown 49.5
2666 Male, age 74, left hemisphere 47.7
1830 Male, age 51, unknown 47.2
2828 Female, age 72, unknown 45.7
2019 Male, age 18, unknown 42.5
2586 Male, age 75, left hemisphere 39.8
Dorsal raphe nucleus
nTPM: 47.0
2047 Male, age 72, unknown 49.9
2750 Male, age 76, both hemispheres 49.7
2016 Female, age 72, unknown 48.7
1828 Male, age 53, unknown 44.0
2298 Female, age 72, unknown 42.6
Inferior colliculus
nTPM: 50.5
2097 Female, age 72, unknown 51.4
1848 Female, age 42, unknown 50.4
1890 Male, age 53, unknown 50.2
2849 Male, age 72, unknown 49.9
Median raphe nucleus
nTPM: 48.8
2220 Male, age 76, midline 48.8
Periaquaductal grey, anterior
nTPM: 47.9
1947 Male, age 18, unknown 52.4
2502 Female, age 75, unknown 47.3
1795 Male, age 51, unknown 44.0
Periaquaductal grey, dorsal
nTPM: 49.8
1840 Male, age 53, unknown 56.5
2464 Female, age 72, unknown 50.1
1831 Male, age 72, unknown 46.5
2850 Male, age 76, both hemispheres 46.1
Periaquaductal grey, lateral
nTPM: 44.1
2140 Male, age 76, both hemispheres 47.7
2053 Male, age 18, unknown 45.9
2272 Male, age 74, both hemispheres 38.8
Pretectal area
nTPM: 45.9
2825 Male, age 18, unknown 49.4
1815 Male, age 53, unknown 47.7
1816 Male, age 51, unknown 47.7
1944 Female, age 72, unknown 47.5
2224 Female, age 72, unknown 46.7
2316 Male, age 76, right hemisphere 46.3
2007 Male, age 72, unknown 45.5
1817 Female, age 42, unknown 44.9
2667 Female, age 75, unknown 43.7
2407 Male, age 75, both hemispheres 43.1
2273 Male, age 74, both hemispheres 42.3
Red nucleus
nTPM: 46.9
2503 Female, age 72, unknown 52.3
1821 Female, age 72, unknown 50.3
2588 Male, age 74, left hemisphere 50.3
2725 Female, age 75, unknown 47.9
1865 Male, age 51, unknown 46.6
1904 Male, age 53, unknown 46.6
1954 Female, age 42, unknown 46.4
2823 Male, age 76, right hemisphere 46.1
2584 Male, age 75, left hemisphere 45.1
2227 Male, age 72, unknown 44.2
2769 Male, age 72, unknown 44.2
2785 Male, age 18, unknown 42.8
Substantia nigra
nTPM: 51.2
2241 Male, age 72, unknown 60.4
1916 Female, age 42, unknown 54.9
1851 Male, age 51, unknown 51.4
2409 Female, age 72, unknown 51.3
2699 Male, age 18, unknown 50.5
2665 Male, age 74, both hemispheres 50.2
2583 Male, age 75, right hemisphere 49.4
2590 Female, age 75, unknown 48.1
1889 Female, age 72, unknown 47.9
1941 Male, age 53, unknown 47.8
Superior colliculus
nTPM: 45.8
1895 Male, age 76, right hemisphere 50.5
2668 Female, age 75, unknown 50.3
1839 Male, age 51, unknown 48.2
1913 Female, age 42, unknown 46.6
2587 Male, age 74, left hemisphere 46.2
2261 Male, age 18, unknown 45.8
2087 Female, age 72, unknown 44.8
1796 Male, age 53, unknown 43.8
1995 Male, age 72, unknown 42.1
2664 Male, age 75, both hemispheres 39.8
Ventral tegmental area
nTPM: 48.3
2410 Female, age 72, unknown 51.6
2218 Male, age 76, both hemispheres 48.7
1915 Female, age 42, unknown 48.5
1942 Male, age 51, unknown 48.0
2021 Male, age 53, unknown 46.9
2223 Female, age 72, unknown 45.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.2
Samples: 183

Max nTPM: 81.7
Min nTPM: 21.1
Std nTPM: 8.2
Median nTPM: 42.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 81.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 80.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 73.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 63.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 62.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 60.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 60.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 59.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 57.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 56.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 54.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 65.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.6
FF:10158-103A5 76 years, female 65.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.8
Samples: 4

Max nTPM: 45.2
Min nTPM: 35.1
Sample A Female 43.6
Sample B Female 39.2
Sample C Male 45.2
Sample D Male 35.1
Midbrain
nTPM: 44.2
Samples: 4

Max nTPM: 50.8
Min nTPM: 36.5
Sample A Female 36.5
Sample B Female 45.7
Sample C Male 50.8
Sample D Male 43.7
Periaqueductal gray
nTPM: 39.9
Samples: 3

Max nTPM: 41.3
Min nTPM: 38.0
Sample B Female 41.3
Sample C Male 40.5
Sample D Male 38.0
Superior colliculi
nTPM: 39.9
Samples: 4

Max nTPM: 44.3
Min nTPM: 37.3
Sample A Female 37.3
Sample B Female 38.3
Sample C Male 44.3
Sample D Male 39.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.5
Samples: 4

Max nTPM: 49.3
Min nTPM: 37.2
Sample A Male 37.2
Sample B Male 48.1
Sample C Female 49.3
Sample D Female 47.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
74821956 Antisense, RP_060321_02_F03, Mouse strain C57BL/6J (56 days, male) 0.5

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