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  • EFHD1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:324.6 nTPM
HPA Brain:202.2 nTPM
GTEx:324.6 nTPM
FANTOM5:295.3 Scaled Tags Per Million
Pig:125.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 202.2
1981 Female, age 72, midline 235.9
2816 Male, age 47, midline 206.1
2194 Female, age 79, both hemispheres 202.5
2048 Male, age 55, midline 189.2
2565 Male, age 75, midline 177.0
Cervical spinal cord, dorsal horn
nTPM: 195.7
2296 Male, age 66, both hemispheres 313.4
2173 Female, age 72, unknown 297.9
2069 Male, age 47, both hemispheres 183.1
1877 Male, age 55, unknown 140.3
2721 Male, age 90, both hemispheres 120.3
2297 Male, age 75, both hemispheres 119.0
Cervical spinal cord, ventral horn
nTPM: 199.1
2068 Male, age 55, unknown 233.1
2820 Female, age 79, both hemispheres 223.2
2098 Female, age 72, unknown 209.4
2809 Male, age 90, both hemispheres 194.3
2480 Male, age 75, both hemispheres 167.8
2295 Male, age 66, both hemispheres 166.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

324.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 324.6
Samples: 204

Max nTPM: 821.8
Min nTPM: 63.2
Std nTPM: 101.7
Median nTPM: 316.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 821.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 686.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 610.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 593.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 528.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 519.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 510.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 508.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 486.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 482.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 476.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 475.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 474.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 472.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 471.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 468.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 466.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 462.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 458.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 456.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 456.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 453.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 452.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 443.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 442.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 437.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 432.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 431.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 429.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 427.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 425.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 421.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 420.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 419.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 414.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 410.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 406.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 403.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 403.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 402.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 402.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 401.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 395.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 394.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 392.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 391.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 391.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 390.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 388.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 387.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 386.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 386.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 384.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 382.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 375.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 372.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 371.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 370.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 367.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 367.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 363.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 362.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 362.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 361.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 361.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 360.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 357.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 356.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 356.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 354.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 352.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 352.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 350.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 349.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 349.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 347.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 346.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 345.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 345.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 344.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 344.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 343.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 340.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 339.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 339.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 338.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 338.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 336.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 335.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 334.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 329.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 328.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 327.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 327.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 326.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 322.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 321.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 321.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 319.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 319.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 318.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 317.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 316.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 315.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 314.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 314.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 313.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 309.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 307.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 304.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 303.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 302.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 301.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 301.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 300.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 298.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 297.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 295.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 295.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 294.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 292.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 292.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 288.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 288.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 286.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 286.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 286.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 285.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 285.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 284.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 283.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 283.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 282.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 280.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 280.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 280.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 279.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 276.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 274.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 273.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 270.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 270.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 268.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 267.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 267.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 266.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 265.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 264.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 263.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 260.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 260.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 258.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 257.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 257.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 256.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 256.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 256.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 250.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 249.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 249.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 248.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 247.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 247.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 242.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 238.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 238.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 237.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 236.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 236.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 233.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 228.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 227.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 226.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 224.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 224.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 222.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 219.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 216.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 210.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 210.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 210.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 210.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 210.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 209.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 203.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 199.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 191.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 190.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 190.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 190.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 189.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 187.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 183.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 181.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 179.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 178.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 173.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 168.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 160.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 157.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 138.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 128.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 119.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 63.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

295.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 295.3
FF:10159-103A6 76 years, female 328.9
FF:10181-103D1 60 years, female 261.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 125.4
Samples: 4

Max nTPM: 216.4
Min nTPM: 74.3
Sample A Female 74.3
Sample B Female 216.4
Sample C Male 117.7
Sample D Male 93.0
Ventral spinal cord
nTPM: 110.6
Samples: 4

Max nTPM: 173.7
Min nTPM: 84.5
Sample A Female 84.5
Sample B Female 173.7
Sample C Male 87.0
Sample D Male 97.1

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