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  • HSPE1
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:79.4 nTPM
GTEx:79.4 nTPM
FANTOM5:73.0 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 79.4
Samples: 105

Max nTPM: 175.7
Min nTPM: 48.4
Std nTPM: 20.6
Median nTPM:
491_1 89 years, female 175.7
99_1 64 years, male 134.2
119_1 70 years, female 120.5
308_1 70 years, female 119.3
109_1 81 years, female 117.3
414_1 84 years, female 116.0
490_1 67 years, female 115.4
89_1 63 years, male 114.0
413_1 59 years, female 113.7
120_1 70 years, female 113.6
42_1 85 years, male 106.1
41_1 94 years, female 104.1
315_1 62 years, female 104.0
139_1 64 years, female 101.6
317_1 60 years, male 101.0
2_1 77 years, female 100.3
162_1 79 years, female 98.6
447_1 81 years, male 98.0
142_1 61 years, female 96.6
495_1 57 years, female 95.5
266_1 85 years, male 95.4
379_1 60 years, male 95.3
313_1 79 years, female 94.3
17_1 71 years, male 92.8
452_1 88 years, female 91.2
265_1 87 years, male 91.0
384_1 83 years, male 90.5
149_1 88 years, male 88.9
173_1 67 years, male 88.7
115_1 83 years, male 88.3
501_1 88 years, male 88.3
307_1 66 years, female 87.7
415_1 77 years, female 87.7
145_1 84 years, male 87.4
117_1 61 years, male 86.8
466_1 57 years, female 85.0
43_1 64 years, female 83.0
246_1 77 years, male 82.5
347_1 72 years, male 82.1
311_1 78 years, male 81.4
126_1 63 years, male 81.1
404_1 82 years, female 80.9
4_1 88 years, female 80.3
153_1 70 years, female 80.2
375_1 74 years, female 78.2
377_1 82 years, female 77.9
18_1 88 years, male 77.3
324_1 76 years, male 77.1
243_1 75 years, male 76.7
396_1 62 years, male 76.5
322_1 76 years, male 76.4
189_1 76 years, male 75.6
394_1 75 years, female 74.4
81_1 67 years, male 74.3
229_1 69 years, female 73.4
499_1 55 years, female 73.3
35_1 74 years, female 73.2
177_1 74 years, male 72.8
237_1 82 years, male 72.7
316_1 62 years, male 72.3
254_1 77 years, female 71.7
9_1 66 years, female 70.8
506_1 65 years, male 70.3
351_1 91 years, male 69.4
425_1 59 years, female 69.2
350_1 84 years, female 68.5
355_1 70 years, female 68.0
526_1 61 years, male 67.9
137_1 83 years, male 67.8
314_1 67 years, male 67.8
32_1 67 years, male 67.4
6_1 73 years, female 66.9
386_1 76 years, male 66.2
356_1 87 years, female 66.1
389_1 86 years, female 65.1
348_1 84 years, male 64.9
286_1 68 years, female 64.7
518_1 75 years, female 63.8
319_1 81 years, male 63.7
264_1 73 years, female 63.5
468_1 89 years, male 63.3
406_1 79 years, male 62.7
335_1 73 years, female 62.4
295_1 61 years, female 62.3
321_1 62 years, female 61.3
517_1 88 years, male 60.6
251_1 78 years, male 60.4
320_1 89 years, female 60.2
288_1 66 years, female 59.8
217_1 76 years, male 59.7
480_1 63 years, male 59.5
503_1 68 years, male 59.1
352_1 62 years, male 58.5
293_1 68 years, female 58.3
353_1 82 years, female 58.3
349_1 83 years, male 58.1
172_1 72 years, female 58.0
354_1 81 years, female 57.9
376_1 75 years, female 56.8
318_1 68 years, male 56.4
405_1 91 years, male 55.9
218_1 71 years, female 54.0
291_1 76 years, male 51.8
292_1 71 years, male 51.6
163_1 78 years, male 48.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

73.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 73.0
FF:10030-101E3 24-65 years, mixed 73.0

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