MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.4 nTPM
HPA Brain:57.0 nTPM
GTEx:45.4 nTPM
FANTOM5:60.0 Scaled Tags Per Million
Pig:84.7 nTPM
Mouse:91.0 nTPM
Allen mouse:3.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.0
2666 Male, age 74, left hemisphere 75.8
2586 Male, age 75, left hemisphere 73.8
1827 Male, age 72, unknown 58.7
2219 Male, age 76, both hemispheres 52.2
2828 Female, age 72, unknown 50.8
2019 Male, age 18, unknown 50.1
1870 Female, age 42, unknown 47.1
2411 Female, age 72, unknown 42.0
1833 Male, age 53, unknown 40.1
1830 Male, age 51, unknown 39.2
Dorsal raphe nucleus
nTPM: 45.6
2047 Male, age 72, unknown 50.3
2298 Female, age 72, unknown 49.0
1828 Male, age 53, unknown 47.9
2016 Female, age 72, unknown 43.3
2750 Male, age 76, both hemispheres 37.4
Inferior colliculus
nTPM: 49.5
2097 Female, age 72, unknown 52.5
1890 Male, age 53, unknown 50.3
2849 Male, age 72, unknown 49.2
1848 Female, age 42, unknown 46.1
Median raphe nucleus
nTPM: 42.6
2220 Male, age 76, midline 42.6
Periaquaductal grey, anterior
nTPM: 57.0
2502 Female, age 75, unknown 60.5
1795 Male, age 51, unknown 56.1
1947 Male, age 18, unknown 54.4
Periaquaductal grey, dorsal
nTPM: 46.4
1840 Male, age 53, unknown 53.2
1831 Male, age 72, unknown 48.8
2464 Female, age 72, unknown 44.5
2850 Male, age 76, both hemispheres 39.2
Periaquaductal grey, lateral
nTPM: 42.2
2053 Male, age 18, unknown 51.8
2140 Male, age 76, both hemispheres 38.6
2272 Male, age 74, both hemispheres 36.0
Pretectal area
nTPM: 53.9
1816 Male, age 51, unknown 75.6
2007 Male, age 72, unknown 66.9
1817 Female, age 42, unknown 63.5
1815 Male, age 53, unknown 60.9
1944 Female, age 72, unknown 60.4
2407 Male, age 75, both hemispheres 53.1
2224 Female, age 72, unknown 46.5
2825 Male, age 18, unknown 45.6
2667 Female, age 75, unknown 41.8
2273 Male, age 74, both hemispheres 41.4
2316 Male, age 76, right hemisphere 37.2
Red nucleus
nTPM: 42.7
2584 Male, age 75, left hemisphere 54.3
2588 Male, age 74, left hemisphere 53.6
2725 Female, age 75, unknown 51.5
2785 Male, age 18, unknown 47.9
1821 Female, age 72, unknown 46.5
2503 Female, age 72, unknown 41.7
2769 Male, age 72, unknown 37.5
1865 Male, age 51, unknown 36.9
1954 Female, age 42, unknown 36.5
2227 Male, age 72, unknown 35.7
1904 Male, age 53, unknown 35.6
2823 Male, age 76, right hemisphere 34.1
Substantia nigra
nTPM: 56.9
2665 Male, age 74, both hemispheres 64.0
1916 Female, age 42, unknown 62.5
1851 Male, age 51, unknown 62.4
1941 Male, age 53, unknown 60.5
2583 Male, age 75, right hemisphere 58.0
2241 Male, age 72, unknown 56.8
1889 Female, age 72, unknown 54.8
2409 Female, age 72, unknown 53.9
2590 Female, age 75, unknown 50.6
2699 Male, age 18, unknown 45.8
Superior colliculus
nTPM: 53.0
2664 Male, age 75, both hemispheres 70.0
2261 Male, age 18, unknown 57.1
2668 Female, age 75, unknown 56.9
2587 Male, age 74, left hemisphere 54.4
1796 Male, age 53, unknown 54.3
2087 Female, age 72, unknown 53.8
1839 Male, age 51, unknown 50.2
1895 Male, age 76, right hemisphere 48.9
1913 Female, age 42, unknown 43.8
1995 Male, age 72, unknown 40.9
Ventral tegmental area
nTPM: 48.9
1915 Female, age 42, unknown 59.0
1942 Male, age 51, unknown 49.0
2223 Female, age 72, unknown 49.0
2021 Male, age 53, unknown 46.6
2410 Female, age 72, unknown 45.5
2218 Male, age 76, both hemispheres 44.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.4
Samples: 183

Max nTPM: 82.0
Min nTPM: 18.8
Std nTPM: 10.7
Median nTPM: 43.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 82.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 79.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 76.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 74.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 72.2
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 71.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 67.3
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 65.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 64.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 64.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 63.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.0
FF:10158-103A5 76 years, female 60.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 84.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.1
Samples: 4

Max nTPM: 83.5
Min nTPM: 55.9
Sample A Female 83.5
Sample B Female 70.9
Sample C Male 70.1
Sample D Male 55.9
Midbrain
nTPM: 73.2
Samples: 4

Max nTPM: 84.9
Min nTPM: 61.8
Sample A Female 81.7
Sample B Female 64.5
Sample C Male 84.9
Sample D Male 61.8
Periaqueductal gray
nTPM: 62.9
Samples: 3

Max nTPM: 68.7
Min nTPM: 59.3
Sample B Female 60.6
Sample C Male 68.7
Sample D Male 59.3
Superior colliculi
nTPM: 84.7
Samples: 4

Max nTPM: 94.7
Min nTPM: 65.1
Sample A Female 87.4
Sample B Female 91.7
Sample C Male 94.7
Sample D Male 65.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 91.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.0
Samples: 4

Max nTPM: 94.3
Min nTPM: 85.7
Sample A Male 91.3
Sample B Male 94.3
Sample C Female 85.7
Sample D Female 92.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
69013477 Antisense, RP_050309_02_D12, Mouse strain C57BL/6J (56 days, male) 3.2

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