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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:74.2 nTPM
HPA Brain:57.2 nTPM
GTEx:74.2 nTPM
FANTOM5:114.9 Scaled Tags Per Million
Mouse:207.3 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.2
Sample id Sample description nTPM
Amygdala
nTPM: 57.2
2814 Male, age 76, right hemisphere 67.1
2514 Male, age 75, right hemisphere 64.3
2695 Female, age 67, right hemisphere 55.4
1987 Female, age 91, left hemisphere 55.1
2517 Female, age 94, left hemisphere 44.1
Basal amygdala
nTPM: 41.2
2609 Male, age 75, right hemisphere 51.6
1955 Male, age 76, both hemispheres 47.9
2110 Male, age 80, left hemisphere 47.4
2243 Female, age 91, right hemisphere 44.9
2685 Female, age 94, left hemisphere 34.2
2827 Female, age 67, right hemisphere 21.3
Central amygdala
nTPM: 49.6
1905 Male, age 76, both hemispheres 61.2
2515 Male, age 75, right hemisphere 56.9
2239 Male, age 80, left hemisphere 46.7
2701 Female, age 91, right hemisphere 44.9
2826 Female, age 94, left hemisphere 38.5
Corticomedial amygdala
nTPM: 47.8
2428 Male, age 75, right hemisphere 61.9
2829 Male, age 80, left hemisphere 54.5
2240 Male, age 76, both hemispheres 53.9
2242 Female, age 91, right hemisphere 47.3
2429 Female, age 94, left hemisphere 42.3
2535 Female, age 67, right hemisphere 26.7
Lateral amygdala
nTPM: 44.5
1883 Male, age 76, both hemispheres 57.3
2516 Male, age 75, right hemisphere 56.3
2256 Male, age 80, left hemisphere 42.0
2255 Female, age 91, right hemisphere 41.0
2534 Female, age 94, left hemisphere 39.4
2830 Female, age 67, right hemisphere 31.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 74.2
Samples: 181

Max nTPM: 155.7
Min nTPM: 40.1
Std nTPM: 16.7
Median nTPM: 71.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 155.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 143.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 135.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 117.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 114.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 112.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 112.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 106.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 104.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 103.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 102.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 102.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 100.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 99.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 98.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 98.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 97.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 97.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 95.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 95.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 92.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 92.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 90.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 90.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 89.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 89.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 87.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 87.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 86.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 86.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 85.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 85.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 85.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 85.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 84.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 84.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 84.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 84.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 82.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 82.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 81.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 80.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 80.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 80.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 80.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 79.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 79.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 79.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 79.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 79.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 79.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 79.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 79.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 78.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 78.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 77.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 76.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 76.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 76.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 76.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 76.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 76.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 75.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 75.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 75.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 74.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 74.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 74.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 74.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 74.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 73.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 73.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 73.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 73.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 73.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 72.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 72.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 72.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 72.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 72.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 72.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 72.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 71.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 71.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 71.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 71.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 71.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 71.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 71.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 70.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 70.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 70.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 70.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 70.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 70.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 69.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 69.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 69.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 69.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 69.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 69.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 69.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 68.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 68.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 68.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 68.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 68.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 68.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 68.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 68.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 68.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 68.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 68.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 67.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 67.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 67.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 67.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 67.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 67.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 66.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 66.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 66.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 65.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 65.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 65.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 65.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 65.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 65.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 65.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 65.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 65.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 64.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 64.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 64.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 64.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 64.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 64.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 64.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 63.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 63.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 63.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 63.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 62.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 62.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 62.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 62.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 61.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 61.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 61.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 61.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 60.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 60.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 60.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 60.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 59.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 58.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 57.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 57.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 57.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 56.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 56.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 55.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 55.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 55.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 55.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 54.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 54.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 54.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 53.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 52.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 52.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 52.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 52.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 51.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 51.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 48.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 46.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 42.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 40.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

114.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 114.9
FF:10151-102I7 76 years, female 114.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 207.3
Samples: 4

Max nTPM: 230.7
Min nTPM: 191.5
Sample A Male 191.5
Sample B Male 202.6
Sample C Female 230.7
Sample D Female 204.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
68300926 Antisense, RP_041129_02_D09, Mouse strain C57BL/6J (56 days, male) 0.0

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