HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.3 nTPM
HPA Brain:9.1 nTPM
GTEx:28.3 nTPM
FANTOM5:72.7 Scaled Tags Per Million
Pig:53.5 nTPM
Mouse:45.0 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 9.1
Sample id Sample description nTPM
Hippocampus
nTPM: 7.6
2621 Female, age 67, right hemisphere 11.5
1911 Female, age 85, right hemisphere 11.2
2529 Female, age 94, left hemisphere 7.8
2148 Female, age 91, left hemisphere 6.9
1898 Male, age 80, left hemisphere 6.0
1855 Male, age 76, left hemisphere 2.6
Dentate gyrus
nTPM: 7.5
2530 Female, age 94, left hemisphere 9.8
1927 Female, age 91, both hemispheres 7.6
2246 Female, age 85, both hemispheres 7.6
2531 Female, age 67, both hemispheres 7.3
2010 Male, age 76, both hemispheres 6.4
2528 Male, age 74, both hemispheres 6.4
Entorhinal gyrus
nTPM: 6.4
1787 Male, age 76, left hemisphere 10.8
2613 Female, age 94, left hemisphere 8.3
2764 Male, age 80, right hemisphere 6.6
2117 Female, age 91, right hemisphere 5.8
1938 Female, age 85, left hemisphere 4.7
2686 Male, age 75, right hemisphere 2.6
Hippocampus, CA1
nTPM: 7.4
2749 Male, age 80, left hemisphere 10.6
2082 Female, age 91, right hemisphere 7.9
2045 Male, age 76, both hemispheres 7.0
2527 Male, age 74, both hemispheres 5.9
1873 Female, age 85, both hemispheres 5.8
Hippocampus, CA2
nTPM: 7.6
1892 Male, age 76, both hemispheres 10.5
2249 Male, age 74, both hemispheres 9.6
1963 Male, age 80, left hemisphere 8.0
2437 Female, age 94, left hemisphere 6.3
1940 Female, age 85, left hemisphere 6.2
2113 Female, age 91, right hemisphere 5.3
Hippocampus, CA3
nTPM: 7.9
2436 Male, age 74, both hemispheres 11.9
1867 Male, age 76, both hemispheres 10.1
2620 Female, age 94, left hemisphere 8.6
2137 Male, age 80, left hemisphere 6.4
1891 Female, age 85, both hemispheres 5.3
2861 Female, age 67, both hemispheres 5.3
Parahippocampal cortex
nTPM: 6.6
2245 Female, age 91, both hemispheres 9.7
2622 Female, age 67, right hemisphere 9.3
2018 Male, age 76, both hemispheres 8.2
1990 Female, age 91, right hemisphere 7.9
1933 Female, age 85, both hemispheres 6.9
2532 Female, age 72, left hemisphere 6.2
1850 Male, age 80, both hemispheres 5.7
2693 Female, age 94, both hemispheres 5.4
2250 Female, age 67, right hemisphere 4.0
2692 Male, age 74, both hemispheres 2.7
Perirhinal gyrus
nTPM: 6.4
1794 Male, age 80, right hemisphere 10.2
2521 Female, age 94, right hemisphere 7.6
1847 Female, age 91, left hemisphere 5.7
2848 Male, age 76, right hemisphere 4.3
1841 Female, age 85, right hemisphere 4.2
Subiculum
nTPM: 9.1
2438 Female, age 94, left hemisphere 11.8
1901 Male, age 80, both hemispheres 10.9
2619 Male, age 74, both hemispheres 10.1
2729 Female, age 91, right hemisphere 10.1
1977 Female, age 85, both hemispheres 5.7
2042 Male, age 76, both hemispheres 5.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 28.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.3
Samples: 255

Max nTPM: 51.4
Min nTPM: 13.7
Std nTPM: 6.4
Median nTPM: 27.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 51.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 48.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 47.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 46.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 46.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 44.5
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 43.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 43.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 42.6
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 41.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 41.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 72.7
FF:10169-103B7 60 years, female 73.7
FF:10153-102I9 76 years, female 71.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 53.5
Pig sample Sample description nTPM
Subiculum
nTPM: 47.7
Samples: 4

Max nTPM: 62.7
Min nTPM: 42.4
Sample A Female 62.7
Sample B Female 42.4
Sample C Male 42.9
Sample D Male 42.7
Dorsal hippocampus
nTPM: 53.5
Samples: 4

Max nTPM: 71.9
Min nTPM: 37.4
Sample A Female 71.9
Sample B Female 50.1
Sample C Male 54.5
Sample D Male 37.4
Entorhinal cortex
nTPM: 46.3
Samples: 4

Max nTPM: 51.2
Min nTPM: 40.6
Sample A Female 51.2
Sample B Female 44.3
Sample C Male 48.9
Sample D Male 40.6
Ventral hippocampus
nTPM: 52.6
Samples: 4

Max nTPM: 65.5
Min nTPM: 36.4
Sample A Female 55.0
Sample B Female 36.4
Sample C Male 65.5
Sample D Male 53.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 45.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 41.5
Samples: 4

Max nTPM: 44.5
Min nTPM: 37.7
Sample A Male 41.7
Sample B Male 37.7
Sample C Female 42.2
Sample D Female 44.5
Hippocampal formation
nTPM: 45.0
Samples: 4

Max nTPM: 51.7
Min nTPM: 39.0
Sample A Male 39.0
Sample B Male 41.9
Sample C Female 47.5
Sample D Female 51.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
75695653 Antisense, RP_060518_04_C04, Mouse strain C57BL/6J (56 days, male) 1.9

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