MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.6 nTPM
HPA Brain:38.1 nTPM
GTEx:18.6 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:69.4 nTPM
Mouse:16.6 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2586 Male, age 75, left hemisphere 43.9
2219 Male, age 76, both hemispheres 40.8
2019 Male, age 18, unknown 37.7
1827 Male, age 72, unknown 35.5
1870 Female, age 42, unknown 34.4
1833 Male, age 53, unknown 34.1
2828 Female, age 72, unknown 34.1
2666 Male, age 74, left hemisphere 33.5
1830 Male, age 51, unknown 32.9
2411 Female, age 72, unknown 31.0
Dorsal raphe nucleus
nTPM: 32.6
2016 Female, age 72, unknown 34.7
2047 Male, age 72, unknown 33.9
2750 Male, age 76, both hemispheres 32.6
1828 Male, age 53, unknown 32.4
2298 Female, age 72, unknown 29.7
Inferior colliculus
nTPM: 36.7
2097 Female, age 72, unknown 38.5
1848 Female, age 42, unknown 36.7
1890 Male, age 53, unknown 36.4
2849 Male, age 72, unknown 35.0
Median raphe nucleus
nTPM: 34.2
2220 Male, age 76, midline 34.2
Periaquaductal grey, anterior
nTPM: 38.1
2502 Female, age 75, unknown 42.1
1947 Male, age 18, unknown 37.2
1795 Male, age 51, unknown 35.1
Periaquaductal grey, dorsal
nTPM: 34.5
1831 Male, age 72, unknown 36.7
1840 Male, age 53, unknown 36.2
2464 Female, age 72, unknown 33.1
2850 Male, age 76, both hemispheres 32.0
Periaquaductal grey, lateral
nTPM: 32.9
2140 Male, age 76, both hemispheres 34.6
2053 Male, age 18, unknown 34.0
2272 Male, age 74, both hemispheres 30.2
Pretectal area
nTPM: 36.1
1816 Male, age 51, unknown 40.3
1817 Female, age 42, unknown 39.6
1815 Male, age 53, unknown 39.4
2407 Male, age 75, both hemispheres 39.0
2007 Male, age 72, unknown 38.9
1944 Female, age 72, unknown 36.7
2825 Male, age 18, unknown 33.6
2224 Female, age 72, unknown 33.4
2667 Female, age 75, unknown 33.1
2273 Male, age 74, both hemispheres 33.0
2316 Male, age 76, right hemisphere 30.1
Red nucleus
nTPM: 34.7
2503 Female, age 72, unknown 38.6
2584 Male, age 75, left hemisphere 37.5
2588 Male, age 74, left hemisphere 36.4
1954 Female, age 42, unknown 35.9
1865 Male, age 51, unknown 35.4
1821 Female, age 72, unknown 34.7
2785 Male, age 18, unknown 34.6
2725 Female, age 75, unknown 34.5
2769 Male, age 72, unknown 32.9
1904 Male, age 53, unknown 32.7
2227 Male, age 72, unknown 32.7
2823 Male, age 76, right hemisphere 30.8
Substantia nigra
nTPM: 35.7
2665 Male, age 74, both hemispheres 40.4
1916 Female, age 42, unknown 38.7
1851 Male, age 51, unknown 36.9
2241 Male, age 72, unknown 36.8
2583 Male, age 75, right hemisphere 36.7
2699 Male, age 18, unknown 35.9
1941 Male, age 53, unknown 35.2
1889 Female, age 72, unknown 34.5
2590 Female, age 75, unknown 33.6
2409 Female, age 72, unknown 28.7
Superior colliculus
nTPM: 36.5
2664 Male, age 75, both hemispheres 42.7
2668 Female, age 75, unknown 38.0
1796 Male, age 53, unknown 37.9
2261 Male, age 18, unknown 36.1
2087 Female, age 72, unknown 35.8
1895 Male, age 76, right hemisphere 35.7
1839 Male, age 51, unknown 35.5
2587 Male, age 74, left hemisphere 34.6
1995 Male, age 72, unknown 34.5
1913 Female, age 42, unknown 34.4
Ventral tegmental area
nTPM: 34.5
2223 Female, age 72, unknown 37.7
2410 Female, age 72, unknown 36.1
1942 Male, age 51, unknown 34.9
1915 Female, age 42, unknown 32.9
2218 Male, age 76, both hemispheres 32.7
2021 Male, age 53, unknown 32.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.6
Samples: 183

Max nTPM: 29.8
Min nTPM: 11.7
Std nTPM: 3.0
Median nTPM: 18.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 29.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 26.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 26.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 25.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 25.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 24.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 24.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 24.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 24.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 24.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 23.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 69.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.3
Samples: 4

Max nTPM: 69.9
Min nTPM: 59.6
Sample A Female 65.3
Sample B Female 62.2
Sample C Male 69.9
Sample D Male 59.6
Midbrain
nTPM: 69.4
Samples: 4

Max nTPM: 76.3
Min nTPM: 66.7
Sample A Female 66.7
Sample B Female 66.8
Sample C Male 67.7
Sample D Male 76.3
Periaqueductal gray
nTPM: 62.1
Samples: 3

Max nTPM: 65.0
Min nTPM: 60.0
Sample B Female 61.4
Sample C Male 65.0
Sample D Male 60.0
Superior colliculi
nTPM: 66.4
Samples: 4

Max nTPM: 72.8
Min nTPM: 53.5
Sample A Female 70.2
Sample B Female 53.5
Sample C Male 69.2
Sample D Male 72.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.2
Sample A Male 13.2
Sample B Male 18.6
Sample C Female 17.3
Sample D Female 17.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
69526916 Antisense, RP_050421_01_H08, Mouse strain C57BL/6J (56 days, male) 2.4

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