MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.8 nTPM
HPA Brain:117.4 nTPM
GTEx:9.8 nTPM
FANTOM5:0.5 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:14.6 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.6
2828 Female, age 72, unknown 102.7
2019 Male, age 18, unknown 87.5
1827 Male, age 72, unknown 63.5
2219 Male, age 76, both hemispheres 50.8
2666 Male, age 74, left hemisphere 43.7
2586 Male, age 75, left hemisphere 42.2
1833 Male, age 53, unknown 26.5
2411 Female, age 72, unknown 25.1
1870 Female, age 42, unknown 24.6
1830 Male, age 51, unknown 19.5
Dorsal raphe nucleus
nTPM: 21.1
2298 Female, age 72, unknown 28.6
2750 Male, age 76, both hemispheres 23.1
1828 Male, age 53, unknown 22.7
2047 Male, age 72, unknown 17.1
2016 Female, age 72, unknown 14.0
Inferior colliculus
nTPM: 34.7
2097 Female, age 72, unknown 40.5
1890 Male, age 53, unknown 37.0
1848 Female, age 42, unknown 35.3
2849 Male, age 72, unknown 25.9
Median raphe nucleus
nTPM: 31.2
2220 Male, age 76, midline 31.2
Periaquaductal grey, anterior
nTPM: 49.4
1795 Male, age 51, unknown 78.6
2502 Female, age 75, unknown 52.7
1947 Male, age 18, unknown 16.8
Periaquaductal grey, dorsal
nTPM: 37.8
1831 Male, age 72, unknown 62.6
1840 Male, age 53, unknown 34.2
2464 Female, age 72, unknown 31.4
2850 Male, age 76, both hemispheres 23.0
Periaquaductal grey, lateral
nTPM: 26.9
2053 Male, age 18, unknown 35.8
2140 Male, age 76, both hemispheres 25.9
2272 Male, age 74, both hemispheres 19.0
Pretectal area
nTPM: 117.4
1816 Male, age 51, unknown 244.5
1944 Female, age 72, unknown 218.8
1815 Male, age 53, unknown 185.2
1817 Female, age 42, unknown 183.5
2667 Female, age 75, unknown 171.9
2007 Male, age 72, unknown 154.6
2273 Male, age 74, both hemispheres 32.2
2316 Male, age 76, right hemisphere 29.8
2224 Female, age 72, unknown 25.3
2825 Male, age 18, unknown 23.4
2407 Male, age 75, both hemispheres 22.5
Red nucleus
nTPM: 26.9
2785 Male, age 18, unknown 95.8
2584 Male, age 75, left hemisphere 35.6
2588 Male, age 74, left hemisphere 33.1
2823 Male, age 76, right hemisphere 26.7
2503 Female, age 72, unknown 25.6
1954 Female, age 42, unknown 19.7
1904 Male, age 53, unknown 17.9
1865 Male, age 51, unknown 16.1
1821 Female, age 72, unknown 13.9
2725 Female, age 75, unknown 13.2
2769 Male, age 72, unknown 13.1
2227 Male, age 72, unknown 12.2
Substantia nigra
nTPM: 50.9
1889 Female, age 72, unknown 126.7
2665 Male, age 74, both hemispheres 101.9
1916 Female, age 42, unknown 55.3
1851 Male, age 51, unknown 48.4
2583 Male, age 75, right hemisphere 38.3
2409 Female, age 72, unknown 34.2
1941 Male, age 53, unknown 33.6
2241 Male, age 72, unknown 25.7
2590 Female, age 75, unknown 23.3
2699 Male, age 18, unknown 21.3
Superior colliculus
nTPM: 76.4
2087 Female, age 72, unknown 184.9
1913 Female, age 42, unknown 102.3
1796 Male, age 53, unknown 97.7
1995 Male, age 72, unknown 91.5
2261 Male, age 18, unknown 83.2
2668 Female, age 75, unknown 67.8
1895 Male, age 76, right hemisphere 43.6
2664 Male, age 75, both hemispheres 39.9
1839 Male, age 51, unknown 26.6
2587 Male, age 74, left hemisphere 26.3
Ventral tegmental area
nTPM: 40.8
2218 Male, age 76, both hemispheres 64.6
2410 Female, age 72, unknown 42.9
1942 Male, age 51, unknown 39.9
2223 Female, age 72, unknown 39.1
1915 Female, age 42, unknown 36.0
2021 Male, age 53, unknown 22.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.8
Samples: 183

Max nTPM: 63.2
Min nTPM: 0.4
Std nTPM: 8.9
Median nTPM: 7.1
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 63.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 53.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 42.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 35.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 30.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 28.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 26.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 26.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 25.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 24.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 24.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.0
Samples: 4

Max nTPM: 19.4
Min nTPM: 6.9
Sample A Female 18.0
Sample B Female 11.5
Sample C Male 19.4
Sample D Male 6.9
Midbrain
nTPM: 50.1
Samples: 4

Max nTPM: 152.0
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 12.8
Sample C Male 152.0
Sample D Male 29.8
Periaqueductal gray
nTPM: 10.9
Samples: 3

Max nTPM: 13.0
Min nTPM: 8.8
Sample B Female 10.9
Sample C Male 13.0
Sample D Male 8.8
Superior colliculi
nTPM: 52.0
Samples: 4

Max nTPM: 100.4
Min nTPM: 21.1
Sample A Female 21.1
Sample B Female 41.4
Sample C Male 100.4
Sample D Male 45.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 19.2
Min nTPM: 12.1
Sample A Male 19.2
Sample B Male 12.1
Sample C Female 12.2
Sample D Female 15.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70528605 Antisense, RP_050623_02_H12, Mouse strain C57BL/6J (56 days, male) 0.0

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