MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.3 nTPM
HPA Brain:129.2 nTPM
GTEx:55.3 nTPM
FANTOM5:145.3 Scaled Tags Per Million
Pig:91.8 nTPM
Mouse:27.4 nTPM
Allen mouse:8.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 129.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.3
1830 Male, age 51, unknown 125.3
2019 Male, age 18, unknown 124.9
1833 Male, age 53, unknown 118.3
1870 Female, age 42, unknown 112.2
2586 Male, age 75, left hemisphere 103.9
2219 Male, age 76, both hemispheres 99.5
2666 Male, age 74, left hemisphere 98.9
2411 Female, age 72, unknown 95.1
2828 Female, age 72, unknown 91.0
1827 Male, age 72, unknown 83.3
Dorsal raphe nucleus
nTPM: 69.2
2750 Male, age 76, both hemispheres 119.7
1828 Male, age 53, unknown 70.0
2016 Female, age 72, unknown 62.9
2047 Male, age 72, unknown 51.7
2298 Female, age 72, unknown 41.9
Inferior colliculus
nTPM: 71.6
1890 Male, age 53, unknown 83.3
2849 Male, age 72, unknown 75.9
1848 Female, age 42, unknown 69.9
2097 Female, age 72, unknown 57.5
Median raphe nucleus
nTPM: 66.0
2220 Male, age 76, midline 66.0
Periaquaductal grey, anterior
nTPM: 58.7
2502 Female, age 75, unknown 67.0
1795 Male, age 51, unknown 54.9
1947 Male, age 18, unknown 54.4
Periaquaductal grey, dorsal
nTPM: 52.5
2464 Female, age 72, unknown 65.9
1831 Male, age 72, unknown 63.2
2850 Male, age 76, both hemispheres 47.7
1840 Male, age 53, unknown 33.1
Periaquaductal grey, lateral
nTPM: 71.2
2272 Male, age 74, both hemispheres 84.0
2053 Male, age 18, unknown 76.4
2140 Male, age 76, both hemispheres 53.1
Pretectal area
nTPM: 78.6
2407 Male, age 75, both hemispheres 122.3
1815 Male, age 53, unknown 99.3
1817 Female, age 42, unknown 85.8
2007 Male, age 72, unknown 83.1
2316 Male, age 76, right hemisphere 81.1
1944 Female, age 72, unknown 72.9
2825 Male, age 18, unknown 70.7
1816 Male, age 51, unknown 66.7
2273 Male, age 74, both hemispheres 65.2
2667 Female, age 75, unknown 63.2
2224 Female, age 72, unknown 53.9
Red nucleus
nTPM: 129.2
1904 Male, age 53, unknown 156.6
1865 Male, age 51, unknown 149.3
2584 Male, age 75, left hemisphere 138.2
2785 Male, age 18, unknown 136.4
2227 Male, age 72, unknown 135.9
2823 Male, age 76, right hemisphere 135.7
2769 Male, age 72, unknown 135.4
2588 Male, age 74, left hemisphere 131.2
1821 Female, age 72, unknown 120.6
1954 Female, age 42, unknown 113.9
2503 Female, age 72, unknown 110.9
2725 Female, age 75, unknown 86.8
Substantia nigra
nTPM: 79.0
2583 Male, age 75, right hemisphere 128.0
2590 Female, age 75, unknown 100.4
1889 Female, age 72, unknown 87.2
1851 Male, age 51, unknown 79.5
2665 Male, age 74, both hemispheres 76.3
2699 Male, age 18, unknown 74.8
2409 Female, age 72, unknown 69.9
1941 Male, age 53, unknown 66.5
2241 Male, age 72, unknown 54.7
1916 Female, age 42, unknown 52.3
Superior colliculus
nTPM: 97.3
1913 Female, age 42, unknown 139.8
1995 Male, age 72, unknown 128.5
2668 Female, age 75, unknown 113.1
2587 Male, age 74, left hemisphere 94.2
1895 Male, age 76, right hemisphere 90.6
2664 Male, age 75, both hemispheres 86.0
1839 Male, age 51, unknown 85.6
2261 Male, age 18, unknown 81.2
1796 Male, age 53, unknown 78.6
2087 Female, age 72, unknown 75.7
Ventral tegmental area
nTPM: 85.5
2223 Female, age 72, unknown 134.7
2410 Female, age 72, unknown 83.6
1942 Male, age 51, unknown 77.6
2021 Male, age 53, unknown 77.1
2218 Male, age 76, both hemispheres 75.5
1915 Female, age 42, unknown 64.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 55.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.3
Samples: 183

Max nTPM: 195.6
Min nTPM: 14.4
Std nTPM: 28.0
Median nTPM: 49.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 195.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 168.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 161.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 133.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 132.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 119.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 112.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 110.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 109.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 98.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 96.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 145.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 145.3
FF:10158-103A5 76 years, female 145.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 91.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.3
Samples: 4

Max nTPM: 124.0
Min nTPM: 65.2
Sample A Female 75.9
Sample B Female 65.2
Sample C Male 76.1
Sample D Male 124.0
Midbrain
nTPM: 91.8
Samples: 4

Max nTPM: 161.4
Min nTPM: 62.9
Sample A Female 161.4
Sample B Female 77.3
Sample C Male 62.9
Sample D Male 65.4
Periaqueductal gray
nTPM: 57.4
Samples: 3

Max nTPM: 63.4
Min nTPM: 51.9
Sample B Female 63.4
Sample C Male 51.9
Sample D Male 57.0
Superior colliculi
nTPM: 70.6
Samples: 4

Max nTPM: 81.6
Min nTPM: 49.8
Sample A Female 76.0
Sample B Female 49.8
Sample C Male 75.1
Sample D Male 81.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 29.8
Min nTPM: 25.2
Sample A Male 28.3
Sample B Male 25.2
Sample C Female 29.8
Sample D Female 26.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
2043 Antisense, RP_040407_02_E04, Mouse strain C57BL/6J (56 days, male) 8.2
2044 Antisense, RP_040407_02_E04, Mouse strain C57BL/6J (56 days, male) 2.5

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