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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:74.7 nTPM
HPA Brain:60.7 nTPM
GTEx:74.7 nTPM
FANTOM5:43.3 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:64.0 nTPM
Allen mouse:4.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.7
Sample id Sample description nTPM
Amygdala
nTPM: 54.1
2695 Female, age 67, right hemisphere 60.3
2517 Female, age 94, left hemisphere 57.5
1987 Female, age 91, left hemisphere 54.9
2814 Male, age 76, right hemisphere 49.7
2514 Male, age 75, right hemisphere 47.9
Basal amygdala
nTPM: 57.3
2609 Male, age 75, right hemisphere 63.4
2685 Female, age 94, left hemisphere 62.0
2243 Female, age 91, right hemisphere 61.0
2827 Female, age 67, right hemisphere 53.0
1955 Male, age 76, both hemispheres 52.7
2110 Male, age 80, left hemisphere 51.5
Central amygdala
nTPM: 60.7
2826 Female, age 94, left hemisphere 67.4
2515 Male, age 75, right hemisphere 63.5
2239 Male, age 80, left hemisphere 62.7
1905 Male, age 76, both hemispheres 59.2
2701 Female, age 91, right hemisphere 50.8
Corticomedial amygdala
nTPM: 53.1
2428 Male, age 75, right hemisphere 56.8
2829 Male, age 80, left hemisphere 56.3
2535 Female, age 67, right hemisphere 53.7
2242 Female, age 91, right hemisphere 52.6
2429 Female, age 94, left hemisphere 52.4
2240 Male, age 76, both hemispheres 46.9
Lateral amygdala
nTPM: 56.3
2534 Female, age 94, left hemisphere 66.7
2830 Female, age 67, right hemisphere 56.3
2256 Male, age 80, left hemisphere 55.8
2516 Male, age 75, right hemisphere 55.1
2255 Female, age 91, right hemisphere 54.7
1883 Male, age 76, both hemispheres 49.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 74.7
Samples: 181

Max nTPM: 137.7
Min nTPM: 46.3
Std nTPM: 16.5
Median nTPM: 72.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 137.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 126.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 122.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 120.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 117.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 115.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 108.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 108.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 108.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 107.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 107.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 106.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 105.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 103.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 102.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 101.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 100.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 98.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 96.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 95.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 95.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 94.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 91.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 91.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 89.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 89.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 89.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 88.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 88.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 86.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 86.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 85.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 85.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 85.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 84.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 84.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 84.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 84.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 83.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 83.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 82.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 82.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 82.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 81.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 81.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 81.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 81.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 80.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 79.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 79.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 79.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 79.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 79.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 78.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 78.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 78.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 78.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 78.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 78.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 78.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 78.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 78.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 78.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 77.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 77.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 77.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 77.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 77.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 77.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 77.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 77.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 76.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 76.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 75.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 75.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 75.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 75.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 75.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 74.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 74.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 74.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 74.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 73.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 73.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 73.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 73.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 72.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 72.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 72.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 72.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 72.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 72.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 71.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 71.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 71.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 71.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 71.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 71.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 71.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 71.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 71.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 71.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 70.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 70.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 70.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 70.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 70.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 70.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 70.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 69.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 69.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 69.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 69.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 68.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 68.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 68.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 68.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 68.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 68.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 68.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 68.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 68.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 67.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 67.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 67.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 67.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 66.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 66.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 66.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 66.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 65.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 65.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 65.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 64.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 64.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 64.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 64.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 64.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 63.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 63.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 63.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 63.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 63.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 63.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 63.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 63.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 62.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 62.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 61.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 61.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 60.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 60.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 59.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 59.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 58.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 58.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 57.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 57.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 56.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 55.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 55.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 55.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 55.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 55.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 52.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 52.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 51.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 51.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 50.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 49.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 49.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 49.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 49.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 49.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 49.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 49.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 48.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 46.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 46.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 46.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 46.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

43.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 43.3
FF:10151-102I7 76 years, female 43.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.7
Pig sample Sample description nTPM
Amygdala
nTPM: 15.7
Samples: 4

Max nTPM: 20.1
Min nTPM: 11.8
Sample A Female 20.1
Sample B Female 11.8
Sample C Male 14.7
Sample D Male 16.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 64.0
Samples: 4

Max nTPM: 65.7
Min nTPM: 62.0
Sample A Male 64.5
Sample B Male 62.0
Sample C Female 65.7
Sample D Female 63.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.4
70565276 Antisense, RP_050623_04_F04, Mouse strain C57BL/6J (56 days, male) 6.3
75041563 Antisense, RP_060412_04_F07, Mouse strain C57BL/6J (56 days, male) 5.0
70919878 Antisense, RP_050713_02_C02, Mouse strain C57BL/6J (56 days, male) 1.9

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