MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:262.7 nTPM
HPA Brain:226.5 nTPM
GTEx:262.7 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Pig:76.1 nTPM
Mouse:75.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 226.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 168.4
2828 Female, age 72, unknown 226.3
2586 Male, age 75, left hemisphere 195.5
1827 Male, age 72, unknown 191.3
2666 Male, age 74, left hemisphere 181.5
2219 Male, age 76, both hemispheres 180.5
2411 Female, age 72, unknown 159.8
2019 Male, age 18, unknown 145.4
1870 Female, age 42, unknown 138.7
1833 Male, age 53, unknown 138.1
1830 Male, age 51, unknown 126.7
Dorsal raphe nucleus
nTPM: 201.8
2298 Female, age 72, unknown 238.7
1828 Male, age 53, unknown 212.6
2047 Male, age 72, unknown 209.3
2016 Female, age 72, unknown 201.0
2750 Male, age 76, both hemispheres 147.7
Inferior colliculus
nTPM: 137.5
2097 Female, age 72, unknown 147.2
2849 Male, age 72, unknown 140.7
1890 Male, age 53, unknown 133.6
1848 Female, age 42, unknown 128.6
Median raphe nucleus
nTPM: 224.9
2220 Male, age 76, midline 224.9
Periaquaductal grey, anterior
nTPM: 213.5
1795 Male, age 51, unknown 244.9
1947 Male, age 18, unknown 240.0
2502 Female, age 75, unknown 155.7
Periaquaductal grey, dorsal
nTPM: 169.4
2850 Male, age 76, both hemispheres 191.1
1840 Male, age 53, unknown 176.5
1831 Male, age 72, unknown 173.6
2464 Female, age 72, unknown 136.3
Periaquaductal grey, lateral
nTPM: 162.2
2272 Male, age 74, both hemispheres 182.3
2140 Male, age 76, both hemispheres 165.7
2053 Male, age 18, unknown 138.4
Pretectal area
nTPM: 181.6
2667 Female, age 75, unknown 233.0
2273 Male, age 74, both hemispheres 217.7
1944 Female, age 72, unknown 206.3
1816 Male, age 51, unknown 189.7
2224 Female, age 72, unknown 183.4
2007 Male, age 72, unknown 180.0
1817 Female, age 42, unknown 178.5
2407 Male, age 75, both hemispheres 177.1
1815 Male, age 53, unknown 164.3
2825 Male, age 18, unknown 153.4
2316 Male, age 76, right hemisphere 114.6
Red nucleus
nTPM: 138.2
2725 Female, age 75, unknown 227.8
1821 Female, age 72, unknown 152.9
2785 Male, age 18, unknown 143.3
1954 Female, age 42, unknown 141.7
2503 Female, age 72, unknown 139.0
2769 Male, age 72, unknown 138.8
2227 Male, age 72, unknown 134.8
2584 Male, age 75, left hemisphere 128.3
2823 Male, age 76, right hemisphere 120.8
1904 Male, age 53, unknown 119.6
1865 Male, age 51, unknown 108.9
2588 Male, age 74, left hemisphere 102.1
Substantia nigra
nTPM: 217.1
1916 Female, age 42, unknown 384.8
1851 Male, age 51, unknown 294.2
1941 Male, age 53, unknown 287.7
2699 Male, age 18, unknown 252.7
1889 Female, age 72, unknown 197.9
2583 Male, age 75, right hemisphere 171.2
2241 Male, age 72, unknown 159.2
2409 Female, age 72, unknown 157.9
2665 Male, age 74, both hemispheres 154.8
2590 Female, age 75, unknown 110.9
Superior colliculus
nTPM: 159.1
1796 Male, age 53, unknown 193.3
2664 Male, age 75, both hemispheres 191.8
2668 Female, age 75, unknown 176.5
2087 Female, age 72, unknown 171.0
2587 Male, age 74, left hemisphere 163.0
2261 Male, age 18, unknown 160.9
1995 Male, age 72, unknown 152.4
1913 Female, age 42, unknown 136.9
1839 Male, age 51, unknown 132.1
1895 Male, age 76, right hemisphere 112.7
Ventral tegmental area
nTPM: 226.5
1915 Female, age 42, unknown 305.4
2218 Male, age 76, both hemispheres 259.6
1942 Male, age 51, unknown 238.2
2410 Female, age 72, unknown 199.1
2223 Female, age 72, unknown 183.7
2021 Male, age 53, unknown 172.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 262.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 262.7
Samples: 183

Max nTPM: 540.2
Min nTPM: 69.6
Std nTPM: 102.0
Median nTPM: 242.9
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 540.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 506.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 495.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 490.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 481.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 478.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 461.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 447.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 444.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 444.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 443.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.4
FF:10158-103A5 76 years, female 125.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 76.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.1
Samples: 4

Max nTPM: 126.5
Min nTPM: 12.4
Sample A Female 126.5
Sample B Female 52.2
Sample C Male 113.3
Sample D Male 12.4
Midbrain
nTPM: 41.4
Samples: 4

Max nTPM: 61.7
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 58.2
Sample C Male 38.2
Sample D Male 61.7
Periaqueductal gray
nTPM: 50.3
Samples: 3

Max nTPM: 70.0
Min nTPM: 35.5
Sample B Female 45.3
Sample C Male 70.0
Sample D Male 35.5
Superior colliculi
nTPM: 45.8
Samples: 4

Max nTPM: 73.2
Min nTPM: 19.5
Sample A Female 73.2
Sample B Female 19.5
Sample C Male 37.8
Sample D Male 52.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 75.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.6
Samples: 4

Max nTPM: 91.4
Min nTPM: 61.9
Sample A Male 91.4
Sample B Male 73.0
Sample C Female 61.9
Sample D Female 76.2

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