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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:12.8 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:13.8 nTPM
Mouse:5.1 nTPM
Allen mouse:0.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 12.8
2396 Male, age 61, right hemisphere 15.6
2497 Male, age 66, unknown 12.3
2032 Female, age 42, unknown 10.6
Centromedial thalamic nucleus
nTPM: 11.7
2279 Female, age 85, left hemisphere 12.4
2401 Male, age 76, right hemisphere 11.0
Habenula
nTPM: 10.2
1957 Male, age 80, both hemispheres 11.4
2203 Male, age 61, left hemisphere 10.9
2252 Male, age 62, unknown 10.5
2276 Male, age 66, unknown 8.2
Lateral geniculate body
nTPM: 12.2
2841 Male, age 80, both hemispheres 13.7
2575 Female, age 94, right hemisphere 13.6
2035 Female, age 72, unknown 13.5
2399 Male, age 61, left hemisphere 12.5
2659 Male, age 66, unknown 12.0
1953 Male, age 62, unknown 11.4
2857 Male, age 74, right hemisphere 11.4
2106 Female, age 67, right hemisphere 9.3
Lateral thalamic nuclei
nTPM: 10.9
2765 Female, age 67, both hemispheres 11.9
2661 Female, age 72, unknown 11.7
2577 Male, age 74, both hemispheres 11.6
2573 Female, age 94, left hemisphere 10.5
1903 Male, age 76, left hemisphere 9.0
Medial dorsal thalamic nucleus
nTPM: 10.0
2660 Female, age 72, unknown 12.1
2572 Female, age 94, right hemisphere 11.0
2576 Male, age 74, both hemispheres 11.0
2026 Male, age 62, unknown 10.6
2039 Female, age 72, unknown 10.6
2498 Male, age 66, unknown 10.2
1859 Male, age 76, both hemispheres 10.1
1971 Male, age 61, right hemisphere 9.7
1930 Female, age 42, unknown 9.5
1810 Male, age 48, unknown 9.4
2492 Male, age 75, right hemisphere 9.4
2283 Male, age 80, right hemisphere 8.4
2402 Female, age 67, both hemispheres 8.2
Medial geniculate body
nTPM: 10.9
2049 Male, age 76, both hemispheres 13.5
2207 Male, age 80, right hemisphere 11.5
2657 Male, age 74, right hemisphere 11.4
2217 Female, age 72, unknown 11.3
2650 Female, age 94, left hemisphere 11.1
1811 Female, age 42, unknown 8.8
2571 Male, age 75, right hemisphere 8.7
Nucleus reuniens
nTPM: 12.7
2210 Female, age 85, left hemisphere 15.4
2205 Male, age 80, left hemisphere 12.5
2212 Female, age 67, left hemisphere 10.1
Nucleus rhomboideus
nTPM: 11.4
2280 Female, age 85, left hemisphere 14.1
2213 Female, age 67, left hemisphere 10.9
2206 Male, age 80, both hemispheres 9.3
Posterior thalamic nucleus
nTPM: 10.9
2649 Female, age 94, both hemispheres 14.3
2655 Male, age 74, right hemisphere 11.5
2266 Male, age 76, right hemisphere 9.2
2495 Female, age 67, right hemisphere 8.4
Pulvinar
nTPM: 10.9
2724 Male, age 74, right hemisphere 12.6
2499 Male, age 66, unknown 12.5
2398 Male, age 61, left hemisphere 12.3
1932 Male, age 80, right hemisphere 11.3
2496 Female, age 67, right hemisphere 10.6
1929 Male, age 48, unknown 10.4
1972 Male, age 62, unknown 10.1
1899 Female, age 42, unknown 9.9
2582 Female, age 72, unknown 9.9
2214 Male, age 76, right hemisphere 9.2
Subthalamic nucleus
nTPM: 12.3
2282 Male, age 61, both hemispheres 13.3
2658 Male, age 74, both hemispheres 13.0
2056 Female, age 72, unknown 12.9
2779 Female, age 42, unknown 12.5
2216 Male, age 48, unknown 12.4
2275 Male, age 66, unknown 11.8
2124 Male, age 62, unknown 11.4
2406 Female, age 72, unknown 11.3
Ventral posterolateral thalamic nucleus
nTPM: 11.3
2397 Male, age 61, right hemisphere 12.6
2578 Male, age 74, both hemispheres 12.3
2581 Female, age 72, unknown 12.1
2197 Male, age 80, both hemispheres 11.1
2570 Male, age 75, right hemisphere 10.4
2740 Male, age 76, right hemisphere 9.2
Ventral posteromedial thalamic nucleus
nTPM: 10.7
2653 Male, age 74, both hemispheres 12.1
2127 Male, age 76, right hemisphere 11.3
2281 Male, age 75, right hemisphere 10.4
2202 Male, age 61, left hemisphere 10.3
2758 Male, age 80, both hemispheres 9.5
Ventral thalamic nuclei
nTPM: 11.5
2580 Male, age 66, unknown 13.8
1860 Male, age 76, both hemispheres 13.2
1845 Male, age 48, unknown 12.5
2652 Male, age 74, left hemisphere 12.2
2204 Male, age 80, both hemispheres 11.3
2291 Female, age 72, unknown 11.3
2858 Female, age 72, unknown 10.2
1912 Female, age 42, unknown 9.8
2285 Male, age 62, unknown 9.2
Zona incerta
nTPM: 12.4
2215 Male, age 66, unknown 14.2
2822 Male, age 74, right hemisphere 13.7
2403 Male, age 62, unknown 13.0
2663 Female, age 72, unknown 11.8
2208 Male, age 80, right hemisphere 9.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 14.3
FF:10154-103A1 76 years, female 14.3

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.8
Pig sample Sample description nTPM
Thalamus
nTPM: 13.9
Samples: 4

Max nTPM: 16.4
Min nTPM: 11.9
Sample A Female 12.4
Sample B Female 11.9
Sample C Male 16.4
Sample D Male 14.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 5.1
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.3
Sample A Male 4.3
Sample B Male 6.3
Sample C Female 5.5
Sample D Female 4.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.0
69014416 Antisense, RP_050310_01_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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