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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:106.7 nTPM
HPA Brain:74.3 nTPM
GTEx:106.7 nTPM
FANTOM5:31.4 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:74.0 nTPM
Allen mouse:6.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.3
Sample id Sample description nTPM
Amygdala
nTPM: 69.5
1987 Female, age 91, left hemisphere 74.8
2695 Female, age 67, right hemisphere 73.2
2517 Female, age 94, left hemisphere 69.0
2514 Male, age 75, right hemisphere 66.8
2814 Male, age 76, right hemisphere 63.7
Basal amygdala
nTPM: 66.8
2609 Male, age 75, right hemisphere 77.4
2243 Female, age 91, right hemisphere 72.5
2110 Male, age 80, left hemisphere 72.1
2685 Female, age 94, left hemisphere 67.9
1955 Male, age 76, both hemispheres 56.1
2827 Female, age 67, right hemisphere 55.0
Central amygdala
nTPM: 74.3
2826 Female, age 94, left hemisphere 89.0
2515 Male, age 75, right hemisphere 86.6
2239 Male, age 80, left hemisphere 69.9
2701 Female, age 91, right hemisphere 66.7
1905 Male, age 76, both hemispheres 59.5
Corticomedial amygdala
nTPM: 66.6
2829 Male, age 80, left hemisphere 88.0
2428 Male, age 75, right hemisphere 84.9
2242 Female, age 91, right hemisphere 66.0
2429 Female, age 94, left hemisphere 62.2
2240 Male, age 76, both hemispheres 49.3
2535 Female, age 67, right hemisphere 49.0
Lateral amygdala
nTPM: 69.9
2516 Male, age 75, right hemisphere 83.0
2534 Female, age 94, left hemisphere 80.4
2255 Female, age 91, right hemisphere 67.4
2256 Male, age 80, left hemisphere 63.3
2830 Female, age 67, right hemisphere 62.7
1883 Male, age 76, both hemispheres 62.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 106.7
Samples: 181

Max nTPM: 212.8
Min nTPM: 55.3
Std nTPM: 22.3
Median nTPM: 106.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 212.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 185.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 177.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 165.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 152.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 152.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 150.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 149.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 146.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 145.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 137.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 136.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 134.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 132.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 131.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 131.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 131.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 130.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 129.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 129.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 128.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 127.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 127.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 126.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 125.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 125.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 124.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 123.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 123.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 123.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 123.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 123.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 123.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 122.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 122.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 121.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 120.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 120.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 120.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 119.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 119.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 119.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 119.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 119.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 118.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 118.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 117.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 117.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 117.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 115.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 115.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 115.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 115.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 115.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 114.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 114.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 114.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 114.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 114.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 113.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 113.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 113.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 113.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 113.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 112.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 112.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 112.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 112.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 111.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 111.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 111.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 111.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 110.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 109.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 109.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 109.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 108.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 108.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 108.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 108.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 108.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 107.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 107.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 107.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 107.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 107.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 107.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 107.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 107.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 106.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 106.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 106.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 106.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 106.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 105.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 105.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 105.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 105.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 104.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 104.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 104.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 104.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 103.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 103.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 103.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 103.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 102.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 102.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 102.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 102.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 102.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 101.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 101.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 101.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 100.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 99.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 99.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 99.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 99.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 99.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 98.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 98.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 98.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 98.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 98.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 97.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 96.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 96.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 96.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 96.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 95.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 95.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 95.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 95.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 95.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 94.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 94.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 94.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 94.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 93.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 92.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 91.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 91.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 89.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 88.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 87.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 86.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 85.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 85.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 85.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 84.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 83.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 82.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 81.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 80.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 80.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 80.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 80.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 79.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 79.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 78.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 78.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 77.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 77.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 77.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 76.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 76.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 76.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 74.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 74.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 73.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 71.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 69.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 67.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 61.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 61.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 59.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 57.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 55.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 31.4
FF:10151-102I7 76 years, female 31.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.3
Pig sample Sample description nTPM
Amygdala
nTPM: 21.4
Samples: 4

Max nTPM: 29.7
Min nTPM: 15.8
Sample A Female 29.7
Sample B Female 15.8
Sample C Male 19.6
Sample D Male 20.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 74.0
Samples: 4

Max nTPM: 77.3
Min nTPM: 70.7
Sample A Male 77.3
Sample B Male 74.4
Sample C Female 73.5
Sample D Female 70.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.7
77910727 Antisense, RP_070208_04_F08, Mouse strain C57BL/6J (56 days, male) 9.4
583862 Antisense, RP_040831_01_C01, Mouse strain C57BL/6J (56 days, male) 3.9

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