HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.9 nTPM
HPA Brain:198.4 nTPM
GTEx:79.9 nTPM
FANTOM5:270.1 Scaled Tags Per Million
Pig:550.4 nTPM
Mouse:575.1 nTPM
Allen mouse:15.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 198.4
Sample id Sample description nTPM
Hippocampus
nTPM: 127.6
1898 Male, age 80, left hemisphere 155.5
2148 Female, age 91, left hemisphere 152.1
2621 Female, age 67, right hemisphere 135.6
1855 Male, age 76, left hemisphere 118.8
1911 Female, age 85, right hemisphere 110.5
2529 Female, age 94, left hemisphere 93.2
Dentate gyrus
nTPM: 138.6
2531 Female, age 67, both hemispheres 184.4
1927 Female, age 91, both hemispheres 172.4
2246 Female, age 85, both hemispheres 133.9
2528 Male, age 74, both hemispheres 123.5
2010 Male, age 76, both hemispheres 113.8
2530 Female, age 94, left hemisphere 103.4
Entorhinal gyrus
nTPM: 143.6
2613 Female, age 94, left hemisphere 179.0
1938 Female, age 85, left hemisphere 170.5
2764 Male, age 80, right hemisphere 157.1
1787 Male, age 76, left hemisphere 145.4
2686 Male, age 75, right hemisphere 118.1
2117 Female, age 91, right hemisphere 91.6
Hippocampus, CA1
nTPM: 143.7
2749 Male, age 80, left hemisphere 177.0
2045 Male, age 76, both hemispheres 144.8
1873 Female, age 85, both hemispheres 142.2
2082 Female, age 91, right hemisphere 130.2
2527 Male, age 74, both hemispheres 124.1
Hippocampus, CA2
nTPM: 111.8
1963 Male, age 80, left hemisphere 144.9
2113 Female, age 91, right hemisphere 130.2
1892 Male, age 76, both hemispheres 122.2
2437 Female, age 94, left hemisphere 98.7
1940 Female, age 85, left hemisphere 93.7
2249 Male, age 74, both hemispheres 81.1
Hippocampus, CA3
nTPM: 150.5
2620 Female, age 94, left hemisphere 231.9
2861 Female, age 67, both hemispheres 183.6
2137 Male, age 80, left hemisphere 175.5
1867 Male, age 76, both hemispheres 112.0
1891 Female, age 85, both hemispheres 100.4
2436 Male, age 74, both hemispheres 99.5
Parahippocampal cortex
nTPM: 139.6
2245 Female, age 91, both hemispheres 181.6
1850 Male, age 80, both hemispheres 170.7
1933 Female, age 85, both hemispheres 165.7
2693 Female, age 94, both hemispheres 151.0
2250 Female, age 67, right hemisphere 145.6
1990 Female, age 91, right hemisphere 144.5
2622 Female, age 67, right hemisphere 127.0
2532 Female, age 72, left hemisphere 111.7
2018 Male, age 76, both hemispheres 108.1
2692 Male, age 74, both hemispheres 90.5
Perirhinal gyrus
nTPM: 198.4
1847 Female, age 91, left hemisphere 267.0
2521 Female, age 94, right hemisphere 199.6
1794 Male, age 80, right hemisphere 194.2
1841 Female, age 85, right hemisphere 166.1
2848 Male, age 76, right hemisphere 165.0
Subiculum
nTPM: 96.2
1977 Female, age 85, both hemispheres 128.1
2729 Female, age 91, right hemisphere 120.3
1901 Male, age 80, both hemispheres 95.2
2619 Male, age 74, both hemispheres 87.4
2042 Male, age 76, both hemispheres 73.3
2438 Female, age 94, left hemisphere 72.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 79.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 79.9
Samples: 255

Max nTPM: 286.4
Min nTPM: 5.2
Std nTPM: 49.9
Median nTPM: 77.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 286.4
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 213.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 213.2
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 213.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 209.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 207.1
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 204.9
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 199.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 192.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 189.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 178.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 270.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 270.1
FF:10169-103B7 60 years, female 338.5
FF:10153-102I9 76 years, female 201.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 550.4
Pig sample Sample description nTPM
Subiculum
nTPM: 478.4
Samples: 4

Max nTPM: 627.7
Min nTPM: 361.5
Sample A Female 627.7
Sample B Female 443.9
Sample C Male 480.5
Sample D Male 361.5
Dorsal hippocampus
nTPM: 338.5
Samples: 4

Max nTPM: 438.9
Min nTPM: 250.6
Sample A Female 406.2
Sample B Female 438.9
Sample C Male 250.6
Sample D Male 258.2
Entorhinal cortex
nTPM: 550.4
Samples: 4

Max nTPM: 727.9
Min nTPM: 445.2
Sample A Female 579.3
Sample B Female 449.2
Sample C Male 727.9
Sample D Male 445.2
Ventral hippocampus
nTPM: 416.7
Samples: 4

Max nTPM: 479.0
Min nTPM: 354.0
Sample A Female 354.0
Sample B Female 393.7
Sample C Male 479.0
Sample D Male 439.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 575.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 575.1
Samples: 4

Max nTPM: 695.4
Min nTPM: 513.1
Sample A Male 513.1
Sample B Male 517.2
Sample C Female 574.7
Sample D Female 695.4
Hippocampal formation
nTPM: 439.8
Samples: 4

Max nTPM: 536.4
Min nTPM: 384.1
Sample A Male 536.4
Sample B Male 422.7
Sample C Female 384.1
Sample D Female 416.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 15.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.8
73520985 Antisense, RP_051101_02_G04, Mouse strain C57BL/6J (56 days, male) 16.1
69735078 Antisense, RP_050503_02_A07, Mouse strain C57BL/6J (56 days, male) 15.6

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