MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.8 nTPM
HPA Brain:60.9 nTPM
GTEx:11.8 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:19.7 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.2
2586 Male, age 75, left hemisphere 73.4
1827 Male, age 72, unknown 50.7
2019 Male, age 18, unknown 47.1
2828 Female, age 72, unknown 41.4
2219 Male, age 76, both hemispheres 32.2
1830 Male, age 51, unknown 30.4
1833 Male, age 53, unknown 28.7
2666 Male, age 74, left hemisphere 28.6
2411 Female, age 72, unknown 28.0
1870 Female, age 42, unknown 21.5
Dorsal raphe nucleus
nTPM: 32.8
2298 Female, age 72, unknown 40.7
2750 Male, age 76, both hemispheres 31.6
2016 Female, age 72, unknown 31.5
2047 Male, age 72, unknown 31.3
1828 Male, age 53, unknown 29.0
Inferior colliculus
nTPM: 41.9
1848 Female, age 42, unknown 48.3
2097 Female, age 72, unknown 45.2
1890 Male, age 53, unknown 42.3
2849 Male, age 72, unknown 31.8
Median raphe nucleus
nTPM: 44.8
2220 Male, age 76, midline 44.8
Periaquaductal grey, anterior
nTPM: 31.0
2502 Female, age 75, unknown 49.1
1795 Male, age 51, unknown 27.8
1947 Male, age 18, unknown 16.2
Periaquaductal grey, dorsal
nTPM: 36.5
1831 Male, age 72, unknown 42.9
2464 Female, age 72, unknown 36.9
2850 Male, age 76, both hemispheres 35.1
1840 Male, age 53, unknown 31.0
Periaquaductal grey, lateral
nTPM: 35.1
2053 Male, age 18, unknown 41.1
2272 Male, age 74, both hemispheres 32.9
2140 Male, age 76, both hemispheres 31.2
Pretectal area
nTPM: 49.3
1816 Male, age 51, unknown 96.0
1944 Female, age 72, unknown 80.0
2007 Male, age 72, unknown 60.2
1817 Female, age 42, unknown 60.0
1815 Male, age 53, unknown 58.0
2407 Male, age 75, both hemispheres 35.5
2667 Female, age 75, unknown 33.3
2273 Male, age 74, both hemispheres 32.3
2316 Male, age 76, right hemisphere 31.1
2825 Male, age 18, unknown 28.7
2224 Female, age 72, unknown 26.9
Red nucleus
nTPM: 51.7
2584 Male, age 75, left hemisphere 72.0
1821 Female, age 72, unknown 64.3
2503 Female, age 72, unknown 58.6
2785 Male, age 18, unknown 55.8
2588 Male, age 74, left hemisphere 49.9
1865 Male, age 51, unknown 49.7
1904 Male, age 53, unknown 49.4
1954 Female, age 42, unknown 47.7
2769 Male, age 72, unknown 46.5
2227 Male, age 72, unknown 44.5
2823 Male, age 76, right hemisphere 42.1
2725 Female, age 75, unknown 39.8
Substantia nigra
nTPM: 60.9
1941 Male, age 53, unknown 83.7
2665 Male, age 74, both hemispheres 80.3
2590 Female, age 75, unknown 59.5
1916 Female, age 42, unknown 58.5
2699 Male, age 18, unknown 57.6
2409 Female, age 72, unknown 56.2
1889 Female, age 72, unknown 56.1
2583 Male, age 75, right hemisphere 54.8
1851 Male, age 51, unknown 52.9
2241 Male, age 72, unknown 49.8
Superior colliculus
nTPM: 47.6
2087 Female, age 72, unknown 81.5
2261 Male, age 18, unknown 74.7
1796 Male, age 53, unknown 45.9
2668 Female, age 75, unknown 45.7
1895 Male, age 76, right hemisphere 44.0
1995 Male, age 72, unknown 41.6
2664 Male, age 75, both hemispheres 40.2
1913 Female, age 42, unknown 39.0
1839 Male, age 51, unknown 32.4
2587 Male, age 74, left hemisphere 31.6
Ventral tegmental area
nTPM: 38.3
2410 Female, age 72, unknown 55.1
1915 Female, age 42, unknown 43.2
2218 Male, age 76, both hemispheres 40.7
1942 Male, age 51, unknown 33.7
2021 Male, age 53, unknown 33.6
2223 Female, age 72, unknown 23.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.8
Samples: 183

Max nTPM: 49.8
Min nTPM: 3.2
Std nTPM: 6.4
Median nTPM: 9.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 42.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 32.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 30.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 26.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 26.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 23.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 22.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 22.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.9
Samples: 4

Max nTPM: 15.5
Min nTPM: 9.1
Sample A Female 15.5
Sample B Female 10.1
Sample C Male 12.9
Sample D Male 9.1
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 35.5
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 13.3
Sample C Male 35.5
Sample D Male 18.0
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 16.1
Min nTPM: 12.0
Sample B Female 13.3
Sample C Male 16.1
Sample D Male 12.0
Superior colliculi
nTPM: 22.2
Samples: 4

Max nTPM: 30.2
Min nTPM: 13.2
Sample A Female 17.0
Sample B Female 13.2
Sample C Male 30.2
Sample D Male 28.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.7
Samples: 4

Max nTPM: 20.2
Min nTPM: 18.8
Sample A Male 18.8
Sample B Male 20.1
Sample C Female 19.7
Sample D Female 20.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
69201498 Antisense, RP_050317_03_A08, Mouse strain C57BL/6J (56 days, male) 1.9
100142449 Antisense, RP_110822_02_G07, Mouse strain C57BL/6J (56 days, male) 1.7
100142534 Antisense, RP_080225_01_A02, Mouse strain C57BL/6J (56 days, male) 0.9
72118960 Antisense, RP_051017_04_A01, Mouse strain C57BL/6J (56 days, male) 0.2

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