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  • TISSUE

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  • CD46
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:47.0 nTPM
HPA Brain:32.1 nTPM
GTEx:47.0 nTPM
FANTOM5:200.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 27.5
2816 Male, age 47, midline 30.8
1981 Female, age 72, midline 30.5
2565 Male, age 75, midline 27.9
2048 Male, age 55, midline 24.1
2194 Female, age 79, both hemispheres 24.1
Cervical spinal cord, dorsal horn
nTPM: 30.3
2296 Male, age 66, both hemispheres 46.5
2173 Female, age 72, unknown 34.5
2069 Male, age 47, both hemispheres 30.9
2297 Male, age 75, both hemispheres 28.4
1877 Male, age 55, unknown 23.3
2721 Male, age 90, both hemispheres 18.1
Cervical spinal cord, ventral horn
nTPM: 32.1
2809 Male, age 90, both hemispheres 45.1
2480 Male, age 75, both hemispheres 33.7
2098 Female, age 72, unknown 31.6
2820 Female, age 79, both hemispheres 30.5
2068 Male, age 55, unknown 30.4
2295 Male, age 66, both hemispheres 21.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 47.0
Samples: 204

Max nTPM: 81.9
Min nTPM: 26.1
Std nTPM: 10.4
Median nTPM: 46.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 81.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 80.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 79.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 77.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 76.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 76.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 74.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 70.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 67.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 67.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 67.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 66.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 66.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 65.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 64.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 62.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 61.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 60.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 60.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 58.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 58.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 58.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 58.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 57.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 57.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 56.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 56.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 55.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 55.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 55.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 55.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 55.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 55.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 55.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 55.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 55.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 55.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 55.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 54.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 54.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 54.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 54.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 54.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 53.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 53.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 53.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 53.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 53.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 53.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 52.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 52.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 52.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 52.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 52.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 52.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 52.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 51.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 51.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 51.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 51.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 51.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 51.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 50.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 50.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 50.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 50.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 50.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 50.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 49.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 49.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 49.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 49.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 49.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 49.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 49.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 49.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 49.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 48.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 48.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 48.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 48.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 48.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 48.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 47.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 47.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 47.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 47.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 47.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 47.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 47.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 47.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 47.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 47.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 47.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 47.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 47.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 47.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 46.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 46.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 46.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 46.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 46.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 46.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 46.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 46.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 46.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 46.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 46.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 46.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 46.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 46.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 45.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 45.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 45.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 45.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 45.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 45.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 45.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 45.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 44.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 44.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 44.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 44.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 44.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 44.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 43.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 43.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 43.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 43.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 43.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 43.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 42.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 42.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 42.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 42.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 41.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 41.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 41.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 41.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 41.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 41.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 41.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 41.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 41.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 41.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 40.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 40.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 40.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 40.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 40.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 40.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 39.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 39.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 39.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 39.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 39.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 39.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 39.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 39.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 38.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 38.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 38.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 38.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 38.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 38.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 37.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 37.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 37.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 37.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 37.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 37.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 36.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 36.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 36.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 36.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 35.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 35.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 35.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 35.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 35.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 35.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 35.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 35.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 34.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 34.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 34.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 33.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 33.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 33.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 32.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 32.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 32.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 32.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 32.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 31.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 30.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 30.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 30.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 29.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 28.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 28.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 27.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 27.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 26.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

200.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 200.8
FF:10181-103D1 60 years, female 211.3
FF:10159-103A6 76 years, female 190.4

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