MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.2 nTPM
HPA Brain:48.5 nTPM
GTEx:37.2 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:31.6 nTPM
Mouse:22.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 48.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.4
2586 Male, age 75, left hemisphere 73.6
2666 Male, age 74, left hemisphere 56.1
2828 Female, age 72, unknown 52.5
1827 Male, age 72, unknown 44.2
1870 Female, age 42, unknown 40.6
2411 Female, age 72, unknown 40.5
1833 Male, age 53, unknown 39.8
2219 Male, age 76, both hemispheres 39.8
2019 Male, age 18, unknown 39.1
1830 Male, age 51, unknown 37.4
Dorsal raphe nucleus
nTPM: 42.3
2750 Male, age 76, both hemispheres 49.0
2298 Female, age 72, unknown 43.0
1828 Male, age 53, unknown 41.6
2047 Male, age 72, unknown 40.9
2016 Female, age 72, unknown 37.1
Inferior colliculus
nTPM: 33.9
1890 Male, age 53, unknown 35.3
2849 Male, age 72, unknown 35.0
1848 Female, age 42, unknown 33.7
2097 Female, age 72, unknown 31.7
Median raphe nucleus
nTPM: 42.3
2220 Male, age 76, midline 42.3
Periaquaductal grey, anterior
nTPM: 48.5
1795 Male, age 51, unknown 52.2
2502 Female, age 75, unknown 48.0
1947 Male, age 18, unknown 45.4
Periaquaductal grey, dorsal
nTPM: 34.3
1840 Male, age 53, unknown 38.4
2464 Female, age 72, unknown 36.3
1831 Male, age 72, unknown 33.1
2850 Male, age 76, both hemispheres 29.2
Periaquaductal grey, lateral
nTPM: 32.2
2053 Male, age 18, unknown 37.7
2140 Male, age 76, both hemispheres 29.4
2272 Male, age 74, both hemispheres 29.4
Pretectal area
nTPM: 43.4
1816 Male, age 51, unknown 55.1
1817 Female, age 42, unknown 52.1
1815 Male, age 53, unknown 51.6
2007 Male, age 72, unknown 51.2
1944 Female, age 72, unknown 46.8
2407 Male, age 75, both hemispheres 44.7
2825 Male, age 18, unknown 41.8
2667 Female, age 75, unknown 38.0
2224 Female, age 72, unknown 35.0
2316 Male, age 76, right hemisphere 31.1
2273 Male, age 74, both hemispheres 29.6
Red nucleus
nTPM: 39.6
2584 Male, age 75, left hemisphere 52.3
2588 Male, age 74, left hemisphere 46.7
2785 Male, age 18, unknown 42.1
2769 Male, age 72, unknown 41.3
2503 Female, age 72, unknown 39.7
2227 Male, age 72, unknown 38.9
1904 Male, age 53, unknown 37.2
1954 Female, age 42, unknown 37.0
2823 Male, age 76, right hemisphere 36.6
1865 Male, age 51, unknown 35.8
2725 Female, age 75, unknown 34.3
1821 Female, age 72, unknown 32.7
Substantia nigra
nTPM: 47.4
2665 Male, age 74, both hemispheres 63.5
1916 Female, age 42, unknown 55.0
1851 Male, age 51, unknown 54.5
2583 Male, age 75, right hemisphere 51.8
2241 Male, age 72, unknown 45.7
2590 Female, age 75, unknown 44.8
1889 Female, age 72, unknown 43.1
2699 Male, age 18, unknown 42.7
1941 Male, age 53, unknown 38.8
2409 Female, age 72, unknown 33.7
Superior colliculus
nTPM: 44.5
2664 Male, age 75, both hemispheres 64.2
2668 Female, age 75, unknown 58.4
2087 Female, age 72, unknown 50.2
2261 Male, age 18, unknown 47.4
1796 Male, age 53, unknown 44.8
2587 Male, age 74, left hemisphere 38.1
1913 Female, age 42, unknown 37.1
1995 Male, age 72, unknown 37.1
1839 Male, age 51, unknown 36.2
1895 Male, age 76, right hemisphere 32.0
Ventral tegmental area
nTPM: 43.7
2223 Female, age 72, unknown 45.1
1915 Female, age 42, unknown 44.6
2410 Female, age 72, unknown 44.2
2021 Male, age 53, unknown 43.6
1942 Male, age 51, unknown 42.6
2218 Male, age 76, both hemispheres 42.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 37.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.2
Samples: 183

Max nTPM: 64.5
Min nTPM: 14.2
Std nTPM: 8.8
Median nTPM: 36.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 64.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 61.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 60.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 59.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 58.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 58.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 53.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 53.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 51.9
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 51.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 51.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.6
Samples: 4

Max nTPM: 32.1
Min nTPM: 26.9
Sample A Female 30.0
Sample B Female 26.9
Sample C Male 32.1
Sample D Male 29.3
Midbrain
nTPM: 31.6
Samples: 4

Max nTPM: 39.4
Min nTPM: 22.7
Sample A Female 39.4
Sample B Female 24.8
Sample C Male 39.3
Sample D Male 22.7
Periaqueductal gray
nTPM: 22.5
Samples: 3

Max nTPM: 26.2
Min nTPM: 19.6
Sample B Female 21.7
Sample C Male 26.2
Sample D Male 19.6
Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 29.5
Min nTPM: 25.0
Sample A Female 25.3
Sample B Female 25.0
Sample C Male 29.5
Sample D Male 28.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 25.3
Min nTPM: 21.2
Sample A Male 22.1
Sample B Male 21.3
Sample C Female 21.2
Sample D Female 25.3

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