MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.8 nTPM
HPA Brain:42.1 nTPM
GTEx:43.8 nTPM
FANTOM5:154.6 Scaled Tags Per Million
Pig:48.7 nTPM
Mouse:19.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.7
2828 Female, age 72, unknown 44.7
2411 Female, age 72, unknown 44.0
1830 Male, age 51, unknown 37.2
2019 Male, age 18, unknown 35.0
1870 Female, age 42, unknown 33.3
2666 Male, age 74, left hemisphere 32.2
1827 Male, age 72, unknown 32.0
2219 Male, age 76, both hemispheres 28.3
1833 Male, age 53, unknown 27.0
2586 Male, age 75, left hemisphere 23.1
Dorsal raphe nucleus
nTPM: 34.6
2016 Female, age 72, unknown 46.2
2750 Male, age 76, both hemispheres 37.2
2298 Female, age 72, unknown 36.5
2047 Male, age 72, unknown 30.6
1828 Male, age 53, unknown 22.7
Inferior colliculus
nTPM: 27.9
2097 Female, age 72, unknown 28.8
1890 Male, age 53, unknown 28.7
2849 Male, age 72, unknown 28.0
1848 Female, age 42, unknown 26.0
Median raphe nucleus
nTPM: 28.3
2220 Male, age 76, midline 28.3
Periaquaductal grey, anterior
nTPM: 37.2
1795 Male, age 51, unknown 42.2
2502 Female, age 75, unknown 34.9
1947 Male, age 18, unknown 34.3
Periaquaductal grey, dorsal
nTPM: 29.6
2464 Female, age 72, unknown 31.5
1831 Male, age 72, unknown 29.4
2850 Male, age 76, both hemispheres 28.9
1840 Male, age 53, unknown 28.7
Periaquaductal grey, lateral
nTPM: 35.6
2272 Male, age 74, both hemispheres 45.5
2140 Male, age 76, both hemispheres 34.7
2053 Male, age 18, unknown 26.6
Pretectal area
nTPM: 30.1
2273 Male, age 74, both hemispheres 44.6
2224 Female, age 72, unknown 34.2
2667 Female, age 75, unknown 33.8
1815 Male, age 53, unknown 33.3
2316 Male, age 76, right hemisphere 31.7
2825 Male, age 18, unknown 30.6
2007 Male, age 72, unknown 28.6
1817 Female, age 42, unknown 28.2
2407 Male, age 75, both hemispheres 28.0
1944 Female, age 72, unknown 19.9
1816 Male, age 51, unknown 18.5
Red nucleus
nTPM: 42.1
2503 Female, age 72, unknown 55.9
2227 Male, age 72, unknown 55.3
1904 Male, age 53, unknown 51.8
2588 Male, age 74, left hemisphere 51.3
2769 Male, age 72, unknown 49.4
1865 Male, age 51, unknown 46.5
2785 Male, age 18, unknown 45.2
2823 Male, age 76, right hemisphere 35.7
2725 Female, age 75, unknown 34.0
1954 Female, age 42, unknown 31.1
2584 Male, age 75, left hemisphere 30.1
1821 Female, age 72, unknown 19.1
Substantia nigra
nTPM: 28.0
1851 Male, age 51, unknown 37.0
1916 Female, age 42, unknown 33.9
2590 Female, age 75, unknown 33.3
2583 Male, age 75, right hemisphere 32.6
2699 Male, age 18, unknown 32.5
2665 Male, age 74, both hemispheres 29.3
1889 Female, age 72, unknown 25.6
1941 Male, age 53, unknown 25.5
2409 Female, age 72, unknown 19.0
2241 Male, age 72, unknown 11.7
Superior colliculus
nTPM: 34.6
1995 Male, age 72, unknown 52.1
1913 Female, age 42, unknown 50.4
1796 Male, age 53, unknown 44.9
2587 Male, age 74, left hemisphere 33.0
2261 Male, age 18, unknown 31.4
2087 Female, age 72, unknown 31.2
2668 Female, age 75, unknown 29.3
1839 Male, age 51, unknown 26.4
1895 Male, age 76, right hemisphere 25.2
2664 Male, age 75, both hemispheres 22.5
Ventral tegmental area
nTPM: 34.7
2410 Female, age 72, unknown 37.0
2223 Female, age 72, unknown 36.9
1915 Female, age 42, unknown 36.2
1942 Male, age 51, unknown 33.7
2021 Male, age 53, unknown 33.7
2218 Male, age 76, both hemispheres 30.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.8
Samples: 183

Max nTPM: 170.8
Min nTPM: 4.1
Std nTPM: 26.7
Median nTPM: 39.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 170.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 156.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 128.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 117.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 111.6
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 107.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 106.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 101.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 94.2
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 92.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 89.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 154.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.6
FF:10158-103A5 76 years, female 154.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.4
Samples: 4

Max nTPM: 49.4
Min nTPM: 41.4
Sample A Female 43.2
Sample B Female 43.6
Sample C Male 41.4
Sample D Male 49.4
Midbrain
nTPM: 48.5
Samples: 4

Max nTPM: 61.1
Min nTPM: 36.1
Sample A Female 61.1
Sample B Female 50.5
Sample C Male 36.1
Sample D Male 46.3
Periaqueductal gray
nTPM: 48.7
Samples: 3

Max nTPM: 52.0
Min nTPM: 46.1
Sample B Female 46.1
Sample C Male 52.0
Sample D Male 47.9
Superior colliculi
nTPM: 42.6
Samples: 4

Max nTPM: 50.5
Min nTPM: 33.9
Sample A Female 41.8
Sample B Female 50.5
Sample C Male 33.9
Sample D Male 44.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 28.5
Min nTPM: 11.3
Sample A Male 24.3
Sample B Male 28.5
Sample C Female 11.3
Sample D Female 15.3

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