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  • STMN1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: Medium
Enterocytes - Gradient: Descending
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:83.8 nTPM
HPA:83.8 nTPM
GTEx:72.8 nTPM
FANTOM5:31.6 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA068438Antibody CAB010107
Endocrine cells High-
Enterocytes Medium-
Enterocytes - Gradient Descending-
Enterocytes - Microvilli Not detected-
Glandular cells -Medium
Goblet cells Medium-
Paneth cells Not detected-



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.8
overview
Male, age 65
Small intestine sample 232
nTPM: 71.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 68.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 96.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 98.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 72.8
Samples: 207

Max nTPM: 296.5
Min nTPM: 20.2
Std nTPM: 32.4
Median nTPM: 66.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 296.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 190.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 180.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 154.5
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 149.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 145.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 143.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 137.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 136.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 131.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 130.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 125.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 123.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 120.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 119.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 118.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 118.2
GTEX-1192X-2526-SM-59868 50-59 years, male 117.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 115.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 113.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 112.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 108.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 108.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 108.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 106.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 104.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 103.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 103.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 101.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 101.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 98.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 98.1
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 97.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 96.2
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 95.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 94.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 94.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 93.4
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 93.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 92.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 91.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 91.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 91.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 90.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 90.1
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 89.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 89.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 88.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 88.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 88.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 87.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 87.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 87.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 86.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 86.1
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 85.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 85.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 84.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 83.7
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 83.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 83.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 83.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 82.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 81.5
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 80.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 80.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 79.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 78.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 78.3
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 78.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 77.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 77.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 77.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 77.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 76.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 76.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 75.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 75.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 75.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 74.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 74.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 73.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 73.2
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 73.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 72.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 71.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 71.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 71.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 70.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 70.3
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 70.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 70.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 69.8
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 69.7
GTEX-178AV-1226-SM-GOR11 40-49 years, male 69.1
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 69.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 68.9
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 68.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 68.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 68.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 68.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 68.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 66.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 66.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 66.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 66.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 66.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 65.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 64.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 64.3
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 64.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 64.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 64.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 62.9
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 62.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 62.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 61.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 61.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 61.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 60.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 60.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 60.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 60.4
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 59.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 59.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 59.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 59.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 59.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 58.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 57.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 57.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 57.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 57.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 56.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 56.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 56.9
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 56.9
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 56.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 56.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 56.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 56.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 56.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 56.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 55.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 55.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 55.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 55.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 55.3
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 54.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 54.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 53.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 53.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 53.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 53.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 52.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 51.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 51.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 51.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 50.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 50.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 50.0
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 49.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 48.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 48.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 48.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 48.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 48.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 47.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 47.2
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 47.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 47.1
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 47.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 46.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 46.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 46.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 46.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 46.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 45.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 45.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 45.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 44.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 43.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 43.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 43.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 43.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 42.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 42.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 41.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 41.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 40.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 40.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 38.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 38.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 38.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 38.6
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 37.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 36.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 34.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 33.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 33.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 29.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 28.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 26.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 25.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 25.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 25.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 20.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 31.6
FF:10024-101D6 15,40,85 years, mixed 31.6

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