MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.7 nTPM
HPA Brain:77.2 nTPM
GTEx:50.7 nTPM
FANTOM5:120.2 Scaled Tags Per Million
Pig:84.7 nTPM
Mouse:104.7 nTPM
Allen mouse:9.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 77.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.8
2411 Female, age 72, unknown 68.3
2219 Male, age 76, both hemispheres 63.6
1870 Female, age 42, unknown 61.6
1833 Male, age 53, unknown 58.4
1827 Male, age 72, unknown 56.0
1830 Male, age 51, unknown 55.3
2019 Male, age 18, unknown 54.1
2828 Female, age 72, unknown 52.0
2586 Male, age 75, left hemisphere 49.8
2666 Male, age 74, left hemisphere 48.6
Dorsal raphe nucleus
nTPM: 66.3
2298 Female, age 72, unknown 73.6
2750 Male, age 76, both hemispheres 72.6
2047 Male, age 72, unknown 67.7
1828 Male, age 53, unknown 60.5
2016 Female, age 72, unknown 57.2
Inferior colliculus
nTPM: 54.9
2097 Female, age 72, unknown 63.9
1848 Female, age 42, unknown 56.5
1890 Male, age 53, unknown 50.9
2849 Male, age 72, unknown 48.4
Median raphe nucleus
nTPM: 77.2
2220 Male, age 76, midline 77.2
Periaquaductal grey, anterior
nTPM: 60.5
1947 Male, age 18, unknown 62.6
2502 Female, age 75, unknown 60.4
1795 Male, age 51, unknown 58.4
Periaquaductal grey, dorsal
nTPM: 54.4
2850 Male, age 76, both hemispheres 57.0
2464 Female, age 72, unknown 56.6
1840 Male, age 53, unknown 53.1
1831 Male, age 72, unknown 51.0
Periaquaductal grey, lateral
nTPM: 54.3
2272 Male, age 74, both hemispheres 58.8
2053 Male, age 18, unknown 52.2
2140 Male, age 76, both hemispheres 51.8
Pretectal area
nTPM: 57.7
2224 Female, age 72, unknown 64.2
1944 Female, age 72, unknown 62.7
2273 Male, age 74, both hemispheres 61.8
1816 Male, age 51, unknown 59.5
1815 Male, age 53, unknown 59.2
1817 Female, age 42, unknown 57.9
2667 Female, age 75, unknown 56.3
2007 Male, age 72, unknown 55.6
2825 Male, age 18, unknown 54.0
2316 Male, age 76, right hemisphere 53.8
2407 Male, age 75, both hemispheres 49.4
Red nucleus
nTPM: 57.3
1821 Female, age 72, unknown 66.4
1904 Male, age 53, unknown 62.4
1865 Male, age 51, unknown 60.6
2503 Female, age 72, unknown 60.0
1954 Female, age 42, unknown 59.6
2725 Female, age 75, unknown 59.5
2823 Male, age 76, right hemisphere 57.4
2227 Male, age 72, unknown 56.7
2769 Male, age 72, unknown 56.4
2785 Male, age 18, unknown 55.5
2584 Male, age 75, left hemisphere 47.0
2588 Male, age 74, left hemisphere 45.7
Substantia nigra
nTPM: 67.6
1916 Female, age 42, unknown 87.0
2241 Male, age 72, unknown 86.0
1851 Male, age 51, unknown 72.7
1941 Male, age 53, unknown 71.9
2699 Male, age 18, unknown 68.7
2590 Female, age 75, unknown 64.3
2409 Female, age 72, unknown 62.0
1889 Female, age 72, unknown 61.3
2665 Male, age 74, both hemispheres 53.5
2583 Male, age 75, right hemisphere 48.4
Superior colliculus
nTPM: 53.9
2261 Male, age 18, unknown 59.5
2587 Male, age 74, left hemisphere 58.5
1796 Male, age 53, unknown 58.2
1913 Female, age 42, unknown 58.0
2087 Female, age 72, unknown 54.8
2668 Female, age 75, unknown 54.4
1839 Male, age 51, unknown 52.2
1895 Male, age 76, right hemisphere 51.6
1995 Male, age 72, unknown 51.6
2664 Male, age 75, both hemispheres 40.4
Ventral tegmental area
nTPM: 69.6
2218 Male, age 76, both hemispheres 79.0
2410 Female, age 72, unknown 77.2
1915 Female, age 42, unknown 69.4
2223 Female, age 72, unknown 68.7
1942 Male, age 51, unknown 62.5
2021 Male, age 53, unknown 60.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 50.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.7
Samples: 183

Max nTPM: 82.6
Min nTPM: 34.1
Std nTPM: 7.9
Median nTPM: 49.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 82.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 72.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 70.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 68.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 68.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 68.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 66.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 65.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 65.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 65.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 65.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 120.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.2
FF:10158-103A5 76 years, female 120.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 84.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.9
Samples: 4

Max nTPM: 91.7
Min nTPM: 63.1
Sample A Female 91.7
Sample B Female 63.1
Sample C Male 77.2
Sample D Male 67.7
Midbrain
nTPM: 84.7
Samples: 4

Max nTPM: 97.1
Min nTPM: 72.8
Sample A Female 97.1
Sample B Female 79.3
Sample C Male 89.6
Sample D Male 72.8
Periaqueductal gray
nTPM: 66.5
Samples: 3

Max nTPM: 72.7
Min nTPM: 58.9
Sample B Female 67.9
Sample C Male 72.7
Sample D Male 58.9
Superior colliculi
nTPM: 76.3
Samples: 4

Max nTPM: 90.2
Min nTPM: 50.9
Sample A Female 83.5
Sample B Female 50.9
Sample C Male 90.2
Sample D Male 80.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 104.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.7
Samples: 4

Max nTPM: 107.1
Min nTPM: 100.9
Sample A Male 104.6
Sample B Male 107.1
Sample C Female 106.3
Sample D Female 100.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
73834102 Antisense, RP_050725_01_B09, Mouse strain C57BL/6J (56 days, male) 9.0
70928169 Antisense, RP_050725_01_B09, Mouse strain C57BL/6J (56 days, male) 8.5

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo