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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:299.2 nTPM
GTEx:299.2 nTPM
FANTOM5:406.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003001Antibody CAB000109
Squamous epithelial cells Not detectedNot detected


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

299.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 299.2
Samples: 170

Max nTPM: 1143.9
Min nTPM: 71.8
Std nTPM: 165.9
Median nTPM: 271.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1143.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 963.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 895.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 824.5
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 668.3
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 664.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 638.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 619.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 618.4
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 605.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 603.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 603.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 547.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 533.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 532.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 525.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 501.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 476.2
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 464.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 463.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 463.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 462.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 448.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 443.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 441.9
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 438.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 431.2
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 429.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 409.8
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 409.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 402.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 401.6
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 400.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 396.8
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 389.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 387.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 386.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 378.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 378.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 371.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 362.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 358.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 356.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 355.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 354.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 354.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 345.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 345.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 342.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 342.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 340.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 337.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 337.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 334.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 333.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 332.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 331.5
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 330.3
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 328.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 320.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 320.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 319.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 311.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 308.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 305.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 303.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 301.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 301.4
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 300.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 297.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 297.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 295.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 291.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 291.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 291.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 286.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 286.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 283.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 280.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 278.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 278.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 276.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 275.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 274.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 271.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 270.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 268.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 268.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 268.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 268.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 263.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 261.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 255.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 252.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 251.7
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 247.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 241.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 241.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 240.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 238.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 237.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 235.3
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 234.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 233.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 233.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 231.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 226.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 219.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 212.5
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 211.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 209.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 208.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 208.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 208.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 202.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 202.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 198.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 193.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 189.5
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 189.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 184.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 179.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 178.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 175.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 175.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 174.2
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 173.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 172.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 172.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 172.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 171.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 170.8
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 169.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 169.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 167.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 165.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 165.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 165.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 163.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 162.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 162.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 161.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 158.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 158.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 157.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 155.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 149.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 148.8
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 148.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 147.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 146.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 145.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 144.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 139.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 137.0
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 133.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 132.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 131.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 129.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 126.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 126.0
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 122.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 120.9
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 118.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 112.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 111.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 106.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 92.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 80.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 71.8
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

406.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 406.1
FF:10204-103F6 68 years, female 406.1

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