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RPS25
HPA
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • RPS25
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1230.6 nTPM
FANTOM5:700.2 Scaled Tags Per Million
Pig:203.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA031801
Glial cells High
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1230.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1230.6
Samples: 300

Max nTPM: 3210.4
Min nTPM: 685.3
Std nTPM: 344.9
Median nTPM: 1167.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 3210.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 3078.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 2331.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2269.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2267.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2191.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2177.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2138.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2088.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 2013.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1942.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1929.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1923.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1901.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1842.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1800.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1763.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1763.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1761.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1746.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1732.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1715.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1672.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1668.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1656.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1651.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1642.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1638.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1635.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1610.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1606.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1591.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1587.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1585.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1581.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1581.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1580.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1573.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1566.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1564.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1564.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1560.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1551.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1547.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1544.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1535.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1530.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1529.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1529.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1525.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1518.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1511.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1511.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1507.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1501.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1497.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1493.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1492.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1490.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1485.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1484.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1482.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1478.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1471.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1461.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1448.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1425.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1405.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1403.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1403.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1395.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1390.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1389.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1389.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1388.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1388.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1385.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1371.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1368.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1365.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1363.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1362.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1359.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1356.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1349.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1349.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1348.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1346.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1339.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1332.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1332.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1327.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1315.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1315.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1313.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1312.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1301.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1300.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1299.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1294.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1292.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1291.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1282.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1282.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1279.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1277.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1274.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1272.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1269.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1267.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1263.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1261.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1261.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1260.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1256.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1255.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1250.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1244.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1244.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1244.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1243.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1240.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1238.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1238.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1232.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1232.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1230.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1221.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1220.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1216.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1214.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1212.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1211.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1210.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1210.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1210.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1209.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1208.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1203.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1195.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1187.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1177.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1176.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1176.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1174.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1173.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1172.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1171.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1170.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1169.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1165.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1164.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1163.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1163.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1162.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1162.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1160.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1159.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1157.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1154.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1153.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1151.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1150.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1149.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1149.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1146.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1138.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1137.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1132.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1131.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1129.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1126.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1126.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1125.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1125.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1122.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1120.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1119.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1116.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1114.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1110.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1107.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1104.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1103.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1101.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1100.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1098.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1097.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1095.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 1095.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1093.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1093.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1089.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1084.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1075.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1073.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1073.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1071.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1066.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1064.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1057.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1057.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1056.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1052.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1052.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1051.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1048.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1047.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1047.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1045.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1044.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1042.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1037.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1037.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1033.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1031.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1030.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1029.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1028.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1028.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1024.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1021.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1018.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1009.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1007.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 997.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 997.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 995.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 995.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 994.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 993.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 987.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 986.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 975.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 971.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 970.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 966.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 965.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 964.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 958.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 948.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 946.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 946.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 938.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 936.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 933.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 930.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 928.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 928.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 925.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 924.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 924.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 921.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 921.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 912.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 907.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 905.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 903.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 901.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 888.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 887.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 886.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 885.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 884.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 882.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 878.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 877.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 875.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 861.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 858.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 857.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 853.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 851.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 845.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 839.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 838.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 838.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 830.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 826.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 812.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 811.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 804.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 803.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 800.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 800.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 799.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 796.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 793.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 783.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 774.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 771.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 760.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 755.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 752.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 749.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 747.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 744.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 730.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 706.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 685.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

700.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 700.2
FF:10164-103B2 76 years, female 700.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.2
Pig sample Sample description nTPM
Caudate
nTPM: 203.2
Samples: 4

Max nTPM: 220.8
Min nTPM: 183.6
Sample A Female 220.8
Sample B Female 194.1
Sample C Male 214.4
Sample D Male 183.6

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