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  • HMGN3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:124.6 nTPM
HPA Brain:71.0 nTPM
GTEx:124.6 nTPM
FANTOM5:198.1 Scaled Tags Per Million
Pig:45.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 71.0
2048 Male, age 55, midline 86.3
2816 Male, age 47, midline 73.1
1981 Female, age 72, midline 72.7
2194 Female, age 79, both hemispheres 64.6
2565 Male, age 75, midline 58.3
Cervical spinal cord, dorsal horn
nTPM: 70.5
2296 Male, age 66, both hemispheres 94.1
2173 Female, age 72, unknown 69.6
1877 Male, age 55, unknown 68.7
2069 Male, age 47, both hemispheres 67.5
2721 Male, age 90, both hemispheres 66.3
2297 Male, age 75, both hemispheres 57.0
Cervical spinal cord, ventral horn
nTPM: 58.3
2098 Female, age 72, unknown 73.5
2820 Female, age 79, both hemispheres 64.3
2068 Male, age 55, unknown 55.8
2295 Male, age 66, both hemispheres 54.5
2809 Male, age 90, both hemispheres 52.8
2480 Male, age 75, both hemispheres 48.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 124.6
Samples: 204

Max nTPM: 222.5
Min nTPM: 76.4
Std nTPM: 25.2
Median nTPM: 121.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 222.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 207.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 203.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 194.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 188.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 182.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 179.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 178.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 178.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 171.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 165.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 165.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 164.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 160.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 160.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 159.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 159.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 158.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 157.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 157.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 157.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 156.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 155.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 154.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 152.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 152.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 152.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 152.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 150.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 149.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 148.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 147.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 147.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 146.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 146.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 145.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 145.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 145.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 144.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 144.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 144.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 144.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 143.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 142.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 142.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 142.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 142.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 141.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 141.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 141.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 141.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 141.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 140.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 139.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 139.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 138.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 137.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 137.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 135.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 135.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 133.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 133.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 133.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 132.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 132.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 132.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 132.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 131.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 131.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 130.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 130.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 130.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 130.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 129.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 128.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 128.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 127.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 127.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 126.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 126.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 125.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 125.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 124.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 124.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 124.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 124.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 124.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 124.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 123.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 123.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 123.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 123.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 123.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 123.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 123.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 122.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 122.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 122.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 122.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 122.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 122.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 121.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 121.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 121.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 121.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 121.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 120.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 120.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 120.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 120.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 120.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 120.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 119.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 119.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 118.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 118.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 117.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 117.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 117.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 117.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 117.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 116.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 116.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 116.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 116.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 116.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 116.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 116.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 115.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 114.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 114.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 113.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 113.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 113.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 113.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 113.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 113.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 112.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 112.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 111.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 111.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 110.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 110.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 110.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 110.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 109.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 109.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 109.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 108.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 108.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 108.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 107.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 107.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 106.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 106.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 106.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 106.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 105.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 105.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 105.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 104.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 104.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 103.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 103.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 103.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 103.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 103.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 102.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 102.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 102.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 101.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 101.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 101.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 100.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 100.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 100.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 99.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 98.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 97.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 97.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 97.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 96.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 96.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 95.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 93.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 93.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 92.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 91.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 90.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 89.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 89.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 88.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 87.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 86.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 86.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 85.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 85.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 84.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 84.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 82.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 81.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 81.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 79.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 76.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

198.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 198.1
FF:10159-103A6 76 years, female 209.6
FF:10181-103D1 60 years, female 186.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 45.5
Samples: 4

Max nTPM: 64.7
Min nTPM: 35.0
Sample A Female 35.7
Sample B Female 46.6
Sample C Male 64.7
Sample D Male 35.0
Ventral spinal cord
nTPM: 39.6
Samples: 4

Max nTPM: 42.1
Min nTPM: 37.8
Sample A Female 38.6
Sample B Female 37.8
Sample C Male 42.1
Sample D Male 40.0

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