HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:204.6 nTPM
HPA Brain:109.1 nTPM
GTEx:204.6 nTPM
FANTOM5:158.5 Scaled Tags Per Million
Pig:95.3 nTPM
Mouse:262.5 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039262Antibody HPA045244Antibody HPA059197
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 109.1
Sample id Sample description nTPM
Hippocampus
nTPM: 89.1
1898 Male, age 80, left hemisphere 106.9
1855 Male, age 76, left hemisphere 102.2
2621 Female, age 67, right hemisphere 89.4
1911 Female, age 85, right hemisphere 85.0
2529 Female, age 94, left hemisphere 81.2
2148 Female, age 91, left hemisphere 69.7
Dentate gyrus
nTPM: 90.9
2010 Male, age 76, both hemispheres 118.4
1927 Female, age 91, both hemispheres 102.6
2530 Female, age 94, left hemisphere 90.5
2246 Female, age 85, both hemispheres 83.9
2528 Male, age 74, both hemispheres 81.5
2531 Female, age 67, both hemispheres 68.6
Entorhinal gyrus
nTPM: 74.8
1938 Female, age 85, left hemisphere 95.2
1787 Male, age 76, left hemisphere 83.7
2764 Male, age 80, right hemisphere 83.6
2117 Female, age 91, right hemisphere 66.4
2613 Female, age 94, left hemisphere 63.5
2686 Male, age 75, right hemisphere 56.4
Hippocampus, CA1
nTPM: 109.1
2749 Male, age 80, left hemisphere 180.7
2045 Male, age 76, both hemispheres 105.8
1873 Female, age 85, both hemispheres 100.8
2527 Male, age 74, both hemispheres 88.0
2082 Female, age 91, right hemisphere 70.3
Hippocampus, CA2
nTPM: 100.5
1892 Male, age 76, both hemispheres 130.2
1963 Male, age 80, left hemisphere 120.4
2249 Male, age 74, both hemispheres 112.9
1940 Female, age 85, left hemisphere 87.5
2437 Female, age 94, left hemisphere 80.5
2113 Female, age 91, right hemisphere 71.3
Hippocampus, CA3
nTPM: 100.3
2137 Male, age 80, left hemisphere 151.0
2436 Male, age 74, both hemispheres 112.7
1867 Male, age 76, both hemispheres 110.1
1891 Female, age 85, both hemispheres 80.1
2620 Female, age 94, left hemisphere 74.3
2861 Female, age 67, both hemispheres 73.6
Parahippocampal cortex
nTPM: 80.8
1850 Male, age 80, both hemispheres 107.2
2018 Male, age 76, both hemispheres 93.5
1933 Female, age 85, both hemispheres 89.7
1990 Female, age 91, right hemisphere 86.9
2250 Female, age 67, right hemisphere 85.5
2245 Female, age 91, both hemispheres 84.1
2532 Female, age 72, left hemisphere 79.1
2693 Female, age 94, both hemispheres 70.5
2622 Female, age 67, right hemisphere 56.5
2692 Male, age 74, both hemispheres 55.2
Perirhinal gyrus
nTPM: 97.4
1847 Female, age 91, left hemisphere 113.4
1794 Male, age 80, right hemisphere 102.3
1841 Female, age 85, right hemisphere 98.9
2521 Female, age 94, right hemisphere 95.1
2848 Male, age 76, right hemisphere 77.5
Subiculum
nTPM: 80.9
1901 Male, age 80, both hemispheres 95.9
2042 Male, age 76, both hemispheres 90.3
1977 Female, age 85, both hemispheres 88.4
2438 Female, age 94, left hemisphere 79.2
2619 Male, age 74, both hemispheres 70.4
2729 Female, age 91, right hemisphere 61.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 204.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 204.6
Samples: 255

Max nTPM: 422.5
Min nTPM: 94.7
Std nTPM: 55.1
Median nTPM: 200.6
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 422.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 392.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 381.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 371.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 357.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 351.6
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 333.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 331.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 325.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 320.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 319.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 158.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 158.5
FF:10169-103B7 60 years, female 189.0
FF:10153-102I9 76 years, female 128.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 95.3
Pig sample Sample description nTPM
Subiculum
nTPM: 88.0
Samples: 4

Max nTPM: 108.3
Min nTPM: 77.4
Sample A Female 108.3
Sample B Female 79.9
Sample C Male 77.4
Sample D Male 86.3
Dorsal hippocampus
nTPM: 87.6
Samples: 4

Max nTPM: 99.8
Min nTPM: 79.1
Sample A Female 99.8
Sample B Female 91.2
Sample C Male 80.2
Sample D Male 79.1
Entorhinal cortex
nTPM: 95.3
Samples: 4

Max nTPM: 101.1
Min nTPM: 86.2
Sample A Female 98.7
Sample B Female 101.1
Sample C Male 95.3
Sample D Male 86.2
Ventral hippocampus
nTPM: 76.1
Samples: 4

Max nTPM: 89.6
Min nTPM: 68.1
Sample A Female 71.5
Sample B Female 68.1
Sample C Male 75.2
Sample D Male 89.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 262.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 256.3
Samples: 4

Max nTPM: 273.2
Min nTPM: 240.5
Sample A Male 252.4
Sample B Male 240.5
Sample C Female 259.0
Sample D Female 273.2
Hippocampal formation
nTPM: 262.6
Samples: 4

Max nTPM: 279.6
Min nTPM: 255.7
Sample A Male 279.6
Sample B Male 257.3
Sample C Female 255.7
Sample D Female 257.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
70784672 Antisense, RP_050706_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1

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